MXO02141.5prime Sequence
817 bp (726 high quality bases) assembled on 2007-01-19
> MXO02141.5prime
CAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGAACCAGTCC
CGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATTTTCGCCCA
GCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTCGGTGTATG
GAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCCGGGAGCTG
CAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTCGTCGGGCT
GAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAAGGAGCGCC
TGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGTTTATCAAC
GCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAGAAGATGAA
ATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGGCCAATCCC
AGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCAGCATCAGC
AATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCGGCCGGAAC
GGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTACTTTAGCA
AAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCTTATACTCA
TACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGACTTCCTCCA
CGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACACGGCCCTAA
GACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACTCGCATCTG
ATATACTGGGAGATGCA
MXO02141.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6565-PA | 1278 | CG6565-RA | 1..809 | 9..817 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6565-RC | 2169 | CG6565-RC | 327..1136 | 8..817 | 4050 | 100 | Plus |
| CG6565-RB | 2088 | CG6565-RB | 485..1294 | 8..817 | 4050 | 100 | Plus |
| CG6565-RA | 1930 | CG6565-RA | 327..1136 | 8..817 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13374503..13375153 | 8..658 | 3255 | 100 | Plus |
| 2L | 23513712 | 2L | 13375209..13375371 | 655..817 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:31 has no hits.
MXO02141.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:38 Download gff for
MXO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6565-PA | 1..808 | 9..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:38 Download gff for
MXO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6565-RA | 320..1135 | 1..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:49 Download gff for
MXO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6565-RA | 320..1135 | 1..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:49 Download gff for
MXO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13374496..13375151 | 1..656 | 99 | -> | Plus |
| 2L | 13375211..13375370 | 657..816 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:38 Download gff for
MXO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13374496..13375151 | 1..656 | 99 | -> | Plus |
| arm_2L | 13375211..13375370 | 657..816 | 100 | | Plus |
