MXO02142.3prime Sequence
848 bp (747 high quality bases) assembled on 2007-01-19
> MXO02142.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGTCACCAAAGAGTCCTCCCAGTTCCA
AATCTTCTCCGCCAGTTCCGGTCAACTGGTGTGCTCTGAATACCGTAAAG
AATTTTCCGTCGCTTTTCGAACTCCAGGCCTGCTCATCCGACTCGGCGGC
GATGTGCCGGGCGTGCTTGGGCGGTGTGAAGTGGGTGTACGTGCAATCCG
TGTAGTCAGCCGATGGAGGGTCAACCTCACTATATTCCAGATTGTAGTGC
TCCTTCAGGAAGTCCACGACCTGTTCTTTGGAACCCAAACTGTTGAATTG
CACTCGAAGATCTCGCTTCATTTGAGCGCTATACATAAAGGTGAGGTGGT
GGTGAAAGCACTGGAAAAGCAGGTTATCCCCGGCAGCAGAGGCTATATCT
AGCCACTGTTGTACACAGGACAGTGGCGTTGTTTTACCATCTGGATAGTT
GCTATTGAAGAGAGCCGGATTAGCAAGCAAGCCTCGAGCAGCCATTACAC
CAGCTGCTCCCGTCTGTTCATGCATATCGCAAGCATCCCTATAGCTCTCC
ACATTGCCGTTGACTATCAGGGGGATCTGCAGGGATTGGCGCACCTGAGA
CATGGCTGGGATGTCTAGCGTGTCCTTAGAGTGTTTTTGGGCTGGCGTCC
GACCGTGAAGAGTTAGAAAGGTGACGCCCGCGCTCTCCAACTGACGGGCT
AAATCGATAGTGCGCTGCAACGACTCCTCTCCTCCCAGCAGACGCATCTG
TCCCGAGACACTGAAATCCCCGGCCAGTGTGCGCCTCACCTCCTGAACCA
CTTGATGCACTAGCTCCGGCTGGCGCAGCATTCCGCACCGTAACCTTT
MXO02142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-PA | 1191 | CG10495-RA | 358..1188 | 848..19 | 3990 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-RA | 1371 | CG10495-RA | 445..1275 | 848..19 | 4055 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19063800..19064630 | 848..19 | 4030 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:34 has no hits.
MXO02142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:38 Download gff for
MXO02142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-PA | 358..1191 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:49 Download gff for
MXO02142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 445..1281 | 11..848 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:29 Download gff for
MXO02142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 445..1281 | 11..848 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:29 Download gff for
MXO02142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19063800..19064636 | 11..848 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:49 Download gff for
MXO02142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19063800..19064636 | 11..848 | 98 | | Minus |
MXO02142.5prime Sequence
658 bp (570 high quality bases) assembled on 2007-01-19
> MXO02142.5prime
CAGTCGACATGCACCTGCCGCAACAGAGACCGCACCACGACATCGCTGCG
ATGTTCGCGGAAGCACAATCGGATTTCGTGCGGGTCAGCGCTCCAATGGT
GCGCTATAGTAAGCTGGAATTTCGGCGTCTAGTACGACTGAATGGAGTAC
AACTCGCGTTTACGCCCATGATGATCTCAGACTCCATTAACAACAGCGAA
AAGGCCCGCCAGAACGAGTTCTCCACGGGTGCGGATGACCAGCCGCTGAT
CGCTCAGTTTGCGGCCAAGGATCCTACGGAATTCGTCACCTCCGCCCAGC
TCATCTACCCATATGTCGATGGCATCGATCTAAATTGCGGATGTCCACAA
AGCTGGGCAATGGCGAAAGGTTACGGTTGCGGAATGCTGCGCCAGCCGGA
GCTAGTGCATCAAGTGGTTCAGGAGGTGAGGCGCACACTGCCCGGGGATT
TCAGTGTCTCGGTGAAGATGCGTCTGCTGGGAGGAGAGGAGTCCTTGCAG
CGCACTATCGATTTAGCCCGTCAGTTGGAGAGCGCGGGCGTCACCTTTCT
AACTCTTCACGGTCGGACGCCAGCCCAAAAACACTCTAAAGACACGCTAG
ACATCCCAGCCATGTCTCAGGTGCGCCAATCCCTGCAGAATCCCCTGATA
GTCAACGG
MXO02142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-PA | 1191 | CG10495-RA | 1..650 | 9..658 | 3175 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-RA | 1371 | CG10495-RA | 87..737 | 8..658 | 3210 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19063531..19064092 | 97..658 | 2765 | 99.5 | Plus |
| 2L | 23513712 | 2L | 19063381..19063469 | 8..96 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:42 has no hits.
MXO02142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:39 Download gff for
MXO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-PA | 1..650 | 9..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:28 Download gff for
MXO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 87..737 | 8..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:50 Download gff for
MXO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 87..737 | 8..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:50 Download gff for
MXO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19063381..19063469 | 8..96 | 100 | -> | Plus |
| 2L | 19063531..19064092 | 97..658 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:28 Download gff for
MXO02142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19063381..19063469 | 8..96 | 100 | -> | Plus |
| arm_2L | 19063531..19064092 | 97..658 | 99 | | Plus |
