Clone MXO02144 Report

Search the DGRC for MXO02144

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:44
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG6805-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02144.3prime Sequence

853 bp (673 high quality bases) assembled on 2007-01-19

> MXO02144.3prime
ATGGTCTAGAAAGCTTGCAAGTTGAGTATAGGACACAGCTACAAAAACAA
CAAATGCGAAGGATAGACTAACATTTGGCGTCGCCGGAGATGAGGCAGAT
CCGTGCGTCATTTCGTGGAGCTCCTCGTCGGTGTAGGTCTGGTTGGCAGC
CTCGACCTTGTAGTTGAATGTCGCCGATACGGGCTTGTGGTCGGAGAGAG
TGTAGTCCATGTGGGACTGATAAGACAGCTGGTTGGCACTCAGGGTAATG
CCCGGATAAATGTTGCTCTGCACGCGATGCAAAATCCGATCGCACCAGGC
GGGTCGCCGCTTCAAGTTGTAGTCATTAGTGCCTTCCACGAACTTAAAAG
TGGGCGCAAAGTTGGGCTGCTGCTCCTCCAGCAAGCTGAAGGCGTTTCCC
TTCTCCCGGAGCAGATTCAACTGGTCGAGCTTGAGCAGATCAGCGTATCG
CTGGTTCTCCACATCCGTGCGGACATCCCAAGCGGACATATCGCCGGAGA
GACGGAAGTTAAGATCGCCAAACCAAAAGACAAAGTCGTGATCGAATATC
CGGCGATATCCCTGCGCATTGTACTTGTGATTGTCCACGATTTGGTGATA
GTCTTCGATGCGCTCCTTCAGCTTCTCATCGTGCGCCGCCAGATGGGAGC
AGACGAATGCGACGCCAGTTCCGTAGACCGAAAGTCGAATGCTTACGGCA
CCCTTGTTGCCCCACAGCCCCCCCAGTCCCGTGCGCGTGGCTTCTGTCTC
GATTTCTTTCATGTGCGGGACGTGCTTGTGCTGTGCGAACATGGTTATAA
GAATTCCCTGCAGCTGCTTCGAGTCCCCTTTACGAACTGGTGATCGCTCA
AAA

MXO02144.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-PA 1074 CG6805-RA 239..1071 850..19 4025 99.3 Minus
CG9784-PA 1527 CG9784-RA 630..671 544..503 135 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-RA 1770 CG6805-RA 549..1381 850..19 4080 99.4 Minus
CG6805-RB 1696 CG6805-RB 549..1327 850..73 3810 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17005999..17006507 850..343 2435 99 Minus
2R 25286936 2R 17006787..17007112 344..19 1630 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:32:13 has no hits.

MXO02144.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:40 Download gff for MXO02144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-PA 240..1074 16..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:16 Download gff for MXO02144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 550..1381 19..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:39 Download gff for MXO02144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 550..1381 19..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:39 Download gff for MXO02144.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17006000..17006507 343..849 99 -> Minus
2R 17006789..17007112 19..342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:16 Download gff for MXO02144.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12893505..12894012 343..849 99 -> Minus
arm_2R 12894294..12894617 19..342 100   Minus

MXO02144.5prime Sequence

821 bp (693 high quality bases) assembled on 2007-01-19

> MXO02144.5prime
CAGTCGACATGGTTACGGCCACGGCGATTGCGGATCTGTGCATCTTCCTT
TTGACCTGGAACGTGGGCACCCATACGCCGCGAAATCAGGATCTGAGCTC
CCTTTTGTCCCTTAATGGCACCACCACTTGTCCGGATAACCAGCTGCCCG
ATATCTATGTAATCGGATTCCAGGAGGTGAGCACCACACCGCAGGTGCTA
AAAATCTTCAATGACGATCCGTGGGTGCTGAAGATCGCGGACTCTCTGAG
CGATCACCAGTTCGTAAAGGTGGACTCGAAGCAGCTGCAGGGAATTCTTA
TAACCATGTTCGCACAGCACAAGCACATCCCGCACATGAAAGAAATCGAG
ACAGAAGCCACGCGCACGGGACTTGGAGGGCTGTGGGGCAACAAGGGTGC
CGTAAGCATTCGACTTTCGCTCTACGGAACTGGCGTCGCATTCGTCTGCT
CCCATCTGGCGGCGCACGATGAGAAGCTGAAGGAGCGCATCGAAGACTAT
CACCAAATCGTGGACAATCACAAGTACAATGCGCAGGGATATCGCCGGAT
ATTCGATCACGACTTTGTCTTTTGGTTTGGCGATCTTAACTTCCGTCTCT
CCGGCGATATGTCCGCTTGGGATGTCCGCACGGATGTGGAGAACCAGCGA
TACGCTGATCTGCTCAAGCTCGACCAGTTGAATCTGCTCCGGGAGAAGGG
AAACGCCTTCAGCTTGCTGGAGGAGCAGCAGCCCAACTTTGCGCCCACTT
TTAAGTTCGTGGAAGGCACTAATGACTACAACTTGAAGCGGCGACCCGCC
TGGTGCGATCGGATTTTGCAT

MXO02144.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-PA 1074 CG6805-RA 1..813 9..821 4065 100 Plus
CG9784-PA 1527 CG9784-RA 630..671 554..595 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-RB 1696 CG6805-RB 311..1123 9..821 4065 100 Plus
CG6805-RA 1770 CG6805-RA 311..1123 9..821 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17005761..17006507 9..755 3735 100 Plus
2R 25286936 2R 17006787..17006854 754..821 340 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:27:59 has no hits.

MXO02144.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:40 Download gff for MXO02144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-PA 1..813 9..821 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:57 Download gff for MXO02144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 311..1123 9..821 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:54 Download gff for MXO02144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 311..1123 9..821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:54 Download gff for MXO02144.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17005761..17006507 9..755 100 -> Plus
2R 17006789..17006854 756..821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:57 Download gff for MXO02144.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12893266..12894012 9..755 100 -> Plus
arm_2R 12894294..12894359 756..821 100   Plus