MXO02144.3prime Sequence
853 bp (673 high quality bases) assembled on 2007-01-19
> MXO02144.3prime
ATGGTCTAGAAAGCTTGCAAGTTGAGTATAGGACACAGCTACAAAAACAA
CAAATGCGAAGGATAGACTAACATTTGGCGTCGCCGGAGATGAGGCAGAT
CCGTGCGTCATTTCGTGGAGCTCCTCGTCGGTGTAGGTCTGGTTGGCAGC
CTCGACCTTGTAGTTGAATGTCGCCGATACGGGCTTGTGGTCGGAGAGAG
TGTAGTCCATGTGGGACTGATAAGACAGCTGGTTGGCACTCAGGGTAATG
CCCGGATAAATGTTGCTCTGCACGCGATGCAAAATCCGATCGCACCAGGC
GGGTCGCCGCTTCAAGTTGTAGTCATTAGTGCCTTCCACGAACTTAAAAG
TGGGCGCAAAGTTGGGCTGCTGCTCCTCCAGCAAGCTGAAGGCGTTTCCC
TTCTCCCGGAGCAGATTCAACTGGTCGAGCTTGAGCAGATCAGCGTATCG
CTGGTTCTCCACATCCGTGCGGACATCCCAAGCGGACATATCGCCGGAGA
GACGGAAGTTAAGATCGCCAAACCAAAAGACAAAGTCGTGATCGAATATC
CGGCGATATCCCTGCGCATTGTACTTGTGATTGTCCACGATTTGGTGATA
GTCTTCGATGCGCTCCTTCAGCTTCTCATCGTGCGCCGCCAGATGGGAGC
AGACGAATGCGACGCCAGTTCCGTAGACCGAAAGTCGAATGCTTACGGCA
CCCTTGTTGCCCCACAGCCCCCCCAGTCCCGTGCGCGTGGCTTCTGTCTC
GATTTCTTTCATGTGCGGGACGTGCTTGTGCTGTGCGAACATGGTTATAA
GAATTCCCTGCAGCTGCTTCGAGTCCCCTTTACGAACTGGTGATCGCTCA
AAA
MXO02144.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-PA | 1074 | CG6805-RA | 239..1071 | 850..19 | 4025 | 99.3 | Minus |
CG9784-PA | 1527 | CG9784-RA | 630..671 | 544..503 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-RA | 1770 | CG6805-RA | 549..1381 | 850..19 | 4080 | 99.4 | Minus |
CG6805-RB | 1696 | CG6805-RB | 549..1327 | 850..73 | 3810 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17005999..17006507 | 850..343 | 2435 | 99 | Minus |
2R | 25286936 | 2R | 17006787..17007112 | 344..19 | 1630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:32:13 has no hits.
MXO02144.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:40 Download gff for
MXO02144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-PA | 240..1074 | 16..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:16 Download gff for
MXO02144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 550..1381 | 19..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:39 Download gff for
MXO02144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 550..1381 | 19..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:39 Download gff for
MXO02144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17006000..17006507 | 343..849 | 99 | -> | Minus |
2R | 17006789..17007112 | 19..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:16 Download gff for
MXO02144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12893505..12894012 | 343..849 | 99 | -> | Minus |
arm_2R | 12894294..12894617 | 19..342 | 100 | | Minus |
MXO02144.5prime Sequence
821 bp (693 high quality bases) assembled on 2007-01-19
> MXO02144.5prime
CAGTCGACATGGTTACGGCCACGGCGATTGCGGATCTGTGCATCTTCCTT
TTGACCTGGAACGTGGGCACCCATACGCCGCGAAATCAGGATCTGAGCTC
CCTTTTGTCCCTTAATGGCACCACCACTTGTCCGGATAACCAGCTGCCCG
ATATCTATGTAATCGGATTCCAGGAGGTGAGCACCACACCGCAGGTGCTA
AAAATCTTCAATGACGATCCGTGGGTGCTGAAGATCGCGGACTCTCTGAG
CGATCACCAGTTCGTAAAGGTGGACTCGAAGCAGCTGCAGGGAATTCTTA
TAACCATGTTCGCACAGCACAAGCACATCCCGCACATGAAAGAAATCGAG
ACAGAAGCCACGCGCACGGGACTTGGAGGGCTGTGGGGCAACAAGGGTGC
CGTAAGCATTCGACTTTCGCTCTACGGAACTGGCGTCGCATTCGTCTGCT
CCCATCTGGCGGCGCACGATGAGAAGCTGAAGGAGCGCATCGAAGACTAT
CACCAAATCGTGGACAATCACAAGTACAATGCGCAGGGATATCGCCGGAT
ATTCGATCACGACTTTGTCTTTTGGTTTGGCGATCTTAACTTCCGTCTCT
CCGGCGATATGTCCGCTTGGGATGTCCGCACGGATGTGGAGAACCAGCGA
TACGCTGATCTGCTCAAGCTCGACCAGTTGAATCTGCTCCGGGAGAAGGG
AAACGCCTTCAGCTTGCTGGAGGAGCAGCAGCCCAACTTTGCGCCCACTT
TTAAGTTCGTGGAAGGCACTAATGACTACAACTTGAAGCGGCGACCCGCC
TGGTGCGATCGGATTTTGCAT
MXO02144.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-PA | 1074 | CG6805-RA | 1..813 | 9..821 | 4065 | 100 | Plus |
CG9784-PA | 1527 | CG9784-RA | 630..671 | 554..595 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-RB | 1696 | CG6805-RB | 311..1123 | 9..821 | 4065 | 100 | Plus |
CG6805-RA | 1770 | CG6805-RA | 311..1123 | 9..821 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17005761..17006507 | 9..755 | 3735 | 100 | Plus |
2R | 25286936 | 2R | 17006787..17006854 | 754..821 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:59 has no hits.
MXO02144.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:40 Download gff for
MXO02144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-PA | 1..813 | 9..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:57 Download gff for
MXO02144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 311..1123 | 9..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:54 Download gff for
MXO02144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 311..1123 | 9..821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:54 Download gff for
MXO02144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17005761..17006507 | 9..755 | 100 | -> | Plus |
2R | 17006789..17006854 | 756..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:57 Download gff for
MXO02144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12893266..12894012 | 9..755 | 100 | -> | Plus |
arm_2R | 12894294..12894359 | 756..821 | 100 | | Plus |