MXO02146.5prime Sequence
678 bp (678 high quality bases) assembled on 2007-01-19
> MXO02146.5prime
CAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCGACTTCAAG
CTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGATCTGGACT
CTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGCTCGCATAG
CCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCTGGAACAAT
CTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACCAGTGGATC
CACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGATCCAGCCGC
CCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGGCGACCATC
CAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAGGATGGGGA
TGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCATCGAGGAGC
CCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAACAAGAGCCC
GCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGACCAAATACT
GGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAGGATTACAG
CATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGTCCGTGGAG
GACCTTAGCATCGCAAGCTTTCTAGACC
MXO02146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9948-PA | 657 | CG9948-RA | 1..654 | 9..662 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9948-RC | 779 | CG9948-RC | 71..725 | 8..662 | 3275 | 100 | Plus |
| CG9948-RB | 1394 | CG9948-RB | 244..898 | 8..662 | 3275 | 100 | Plus |
| CG9948-RA | 792 | CG9948-RA | 84..738 | 8..662 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6956453..6956944 | 171..662 | 2460 | 100 | Plus |
| 3L | 28110227 | 3L | 6956234..6956397 | 8..171 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:48:37 has no hits.
MXO02146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:41 Download gff for
MXO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9948-PA | 1..657 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:54 Download gff for
MXO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9948-RA | 77..745 | 1..672 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:41 Download gff for
MXO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9948-RA | 77..745 | 1..672 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:41 Download gff for
MXO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6956227..6956397 | 1..171 | 97 | -> | Plus |
| 3L | 6956454..6956951 | 172..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:54 Download gff for
MXO02146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6949327..6949497 | 1..171 | 97 | -> | Plus |
| arm_3L | 6949554..6950051 | 172..672 | 99 | | Plus |
MXO02146.3prime Sequence
207 bp (188 high quality bases) assembled on 2007-01-19
> MXO02146.3prime
ATGGTCTAGAAAGCTTGCGATGCTAAGGTCCTCCACGGACTGATTACTCA
AGGCACGCAGCTGGCACTTGAGCAGAAATGCTGTAATCCTTCGTTCTGCC
CTTCTCCGCTGCGGTTCCTTTAGTTGGGCCAGTATTTGGTCCATCTGGAG
AAAGCTGCTTCTGGGCGAGATTATTTCAGCGGGCTCTTGTTCCTCGTAGA
TGATTTC
MXO02146.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9948-PA | 657 | CG9948-RA | 466..654 | 207..19 | 945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9948-RC | 779 | CG9948-RC | 537..725 | 207..19 | 945 | 100 | Minus |
| CG9948-RB | 1394 | CG9948-RB | 710..898 | 207..19 | 945 | 100 | Minus |
| CG9948-RA | 792 | CG9948-RA | 550..738 | 207..19 | 945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6956756..6956944 | 207..19 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:03 has no hits.
MXO02146.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:41 Download gff for
MXO02146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9948-PA | 466..657 | 18..207 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:43 Download gff for
MXO02146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9948-RA | 550..745 | 9..207 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:37 Download gff for
MXO02146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9948-RA | 550..745 | 9..207 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:37 Download gff for
MXO02146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6956756..6956951 | 9..207 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:43 Download gff for
MXO02146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6949856..6950051 | 9..207 | 97 | | Minus |
