MXO02149.3prime Sequence
735 bp (634 high quality bases) assembled on 2007-01-19
> MXO02149.3prime
ATGGTCTAGAAAGCTTGCTGTAGGGCAGAGCACCTTCAGGATGTAGTCCG
TAAGGAGGGCCGGAACCGTCGGGCTGTCCTCGTTGATGGCCTTGAGAATC
TTGATCAGGACCTGCAGAGACTGATTGTTGGGCGTGCCGTTCTCCAGGTG
ATACGGAATGACTGTGGTCAAGTACTTGGGCTCGGGACCCTGGAACTTGC
CGCGCTTCTTCTCCACATGGTACTGCCGCCTTTTGTTCTGAACGGCGAGG
AGCAGAGAGATGAACGAGTTCTTCAGCTCCTTCTCGAACTCCAGCTCGTC
GCGCAGGGCCAGCTCGTTGATCAACGTCTCGCTCAGCTCCTGGATCAGCA
CCTCCATCTCCATGTACAGCTCGTTCAGCTGTGTCGTGGTCAGATATTGC
AGTTTTTCCGCATAGAGGGGGGCGCCCAGCACCTCTCGCGCCTTCTCGAT
CACCTCCGAATCGCAGGTCTCCGGCTCGTCCAGCGGGCTCTCGGCCTCGT
CCATGATGTCGTCGATCTCCTTGATCACCTCCTCTACCGTCTTAATCGGC
TGGTCGTCCATGTCACCGTTCAAGCCGTTAAGGATGAGGGCGTGCATGTC
CAAATCGTTGGCCACCGCCTCGTCCTCCTGGTCAGATCTTGACTCATCGC
CCGGAGTCTGGGCTCCAGGCGGATCCGGACCGGATCCAACCGTTGTGGTG
GAACCCTGATGGTCTGGTGGCACTGTGCTGCTGTG
MXO02149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3981-PB | 1425 | Unc-76-RB | 748..1422 | 687..19 | 3135 | 99.1 | Minus |
| CG3981-PA | 1425 | Unc-76-RA | 748..1422 | 687..19 | 3135 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-76-RD | 2191 | CG3981-RD | 427..1139 | 718..19 | 3250 | 98.2 | Minus |
| Unc-76-RC | 3825 | CG3981-RC | 1206..1918 | 718..19 | 3250 | 98.2 | Minus |
| Unc-76-RA | 2860 | CG3981-RA | 1096..1808 | 718..19 | 3250 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2091189..2091450 | 663..405 | 1165 | 98.1 | Minus |
| X | 23542271 | X | 2091518..2091735 | 404..187 | 1090 | 100 | Minus |
| X | 23542271 | X | 2091801..2091891 | 189..99 | 455 | 100 | Minus |
| X | 23542271 | X | 2091962..2092041 | 98..19 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:48:45 has no hits.
MXO02149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:43 Download gff for
MXO02149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3981-PA | 729..1425 | 15..702 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:58 Download gff for
MXO02149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-76-RA | 1115..1813 | 13..702 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:44 Download gff for
MXO02149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-76-RA | 1115..1813 | 13..702 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:44 Download gff for
MXO02149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2091143..2091450 | 405..702 | 96 | -> | Minus |
| X | 2091518..2091733 | 189..404 | 100 | -> | Minus |
| X | 2091802..2091891 | 99..188 | 100 | -> | Minus |
| X | 2091962..2092046 | 13..98 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:58 Download gff for
MXO02149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1985176..1985483 | 405..702 | 96 | -> | Minus |
| arm_X | 1985551..1985766 | 189..404 | 100 | -> | Minus |
| arm_X | 1985835..1985924 | 99..188 | 100 | -> | Minus |
| arm_X | 1985995..1986079 | 13..98 | 97 | | Minus |
MXO02149.5prime Sequence
703 bp (614 high quality bases) assembled on 2007-01-19
> MXO02149.5prime
CAGTCGACATGCGTGACCTCGGCACCAAAATGGCCGAGCTAAAATTCGAG
GCTCCATTGGCAAAGTTCGAGGAAACGGACGAGTGGGGCGGCTGCGACTT
CATCTCGAGTCAGAATGCCATAAACGACACGCTCAACCTGAATCTGAAGG
ACTCCTCCGCCGGCGGCAAGCCGGATGCCACCAAGCTGCGGCTCCTAGAG
GATGCTGTACGCGATGCGCACGTGAGCAAGAACGGAGGAGGAGTAGTGGG
AGGAGGAGCTGGCTCCATTAGCCCCAATTGCAACACGCTCCAGGGTGGGT
CGCTTATTGAAATCGGCCTGTCCGATGTGGGATTGGTGCCGGGCGAGGGA
GCCGGCGTTGGTCTGGACGGTCTGGAGAAGCGCTCCCTGGCCGTCGGCGA
CCATGTGGACAACTTCACGGAGACCTTCGGCGGAAGTCTGGAGGATCTGG
TCAATACGTTCGACGAAAAGATAACCAAGTGTTTCGGCAACTACGAAGAG
AACGTCGAGGAGCTGGCTCCGGTGCAGGTGCGCAGCCAGGAGGAGATCAT
GAACGAATGCCAAATGTGGTGGACCATCACAGGAAACTTTGGCAACATTC
TGCCCATCGACTGGTCCAAGTCGTACACCCGTCAGATGCACATGCCCACA
CTGAATCTGGGCCAGAACCACACGAAGCAGCAGCAGCAGAATCGCAACCA
GCA
MXO02149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3981-PB | 1425 | Unc-76-RB | 1..695 | 9..703 | 3475 | 100 | Plus |
| CG3981-PA | 1425 | Unc-76-RA | 1..695 | 9..703 | 3475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-76-RC | 3825 | CG3981-RC | 496..1191 | 8..703 | 3480 | 100 | Plus |
| Unc-76-RA | 2860 | CG3981-RA | 386..1081 | 8..703 | 3480 | 100 | Plus |
| Unc-76-RB | 2970 | CG3981-RB | 496..1191 | 8..703 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2081105..2081659 | 8..562 | 2775 | 100 | Plus |
| X | 23542271 | X | 2090969..2091109 | 563..703 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:47 has no hits.
MXO02149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:43 Download gff for
MXO02149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3981-PA | 1..694 | 9..702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:08 Download gff for
MXO02149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-76-RB | 491..1190 | 1..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:42 Download gff for
MXO02149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-76-RB | 491..1190 | 1..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:42 Download gff for
MXO02149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2081100..2081659 | 1..562 | 99 | -> | Plus |
| X | 2090969..2091108 | 563..702 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:08 Download gff for
MXO02149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1975133..1975692 | 1..562 | 99 | -> | Plus |
| arm_X | 1985002..1985141 | 563..702 | 100 | | Plus |
