MXO02150.5prime Sequence
822 bp (776 high quality bases) assembled on 2007-01-19
> MXO02150.5prime
CAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGCTATTGCTA
GTCGCAATTCTCATCGGAGTTCTGGTAGCCGAGACCCACGCTCAAGATCA
GAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGCTTCTCGGC
CCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGATCCGGCGGA
CGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTATTCTGGCTC
CGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCATTCGCACA
GTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCATAAACACA
GCTCATACACCAACACAAACCTCATCCACAATCCCAACAACATCGACTTC
GACACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGCATCCACCA
CAACGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCAGTAGCACC
ACCACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAGCAACCGCT
GTTCCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGGCGATGGCA
TCGATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACGATAAGGAC
TATGACTATAACAAGGAGCTGGACAAAGAAATCGACATCGATGGTCCCGA
GCCGGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGAAACTGGTC
ACATACCCCACTACGGATGAAATCGATGTGGATGGCGGCGATGAGGATGA
CAATGGGGATAGCGACATCGAT
MXO02150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10497-PA | 1200 | Sdc-RA | 1..813 | 9..822 | 3980 | 99.6 | Plus |
| CG10497-PB | 681 | Sdc-RB | 1..341 | 9..349 | 1655 | 99.4 | Plus |
| CG10497-PC | 681 | Sdc-RC | 1..341 | 9..349 | 1655 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RA | 2482 | CG10497-RA | 337..1149 | 9..822 | 4015 | 99.6 | Plus |
| Sdc-RD | 1869 | CG10497-RD | 337..1146 | 9..822 | 3960 | 99.3 | Plus |
| Sdc-RH | 2245 | CG10497-RH | 195..912 | 101..822 | 3530 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21398111..21398583 | 822..349 | 2320 | 99.8 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 348..210 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 209..99 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 101..9 | 435 | 97.8 | Minus |
Blast to na_te.dros performed 2014-11-28 23:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 286..450 | 173 | 60.5 | Plus |
MXO02150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:44 Download gff for
MXO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10497-PA | 1..813 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:23 Download gff for
MXO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 337..1149 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:33 Download gff for
MXO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 337..1149 | 9..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:33 Download gff for
MXO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21480091..21480183 | 9..101 | 97 | | Minus |
| 2R | 21398111..21398583 | 349..822 | 99 | <- | Minus |
| 2R | 21399175..21399313 | 210..348 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 102..209 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:23 Download gff for
MXO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17285616..17286088 | 349..822 | 99 | <- | Minus |
| arm_2R | 17286680..17286818 | 210..348 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 102..209 | 100 | <- | Minus |
| arm_2R | 17367596..17367688 | 9..101 | 97 | | Minus |
