Clone Sequence Records
MXO02154.3prime Sequence
699 bp (699 high quality bases) assembled on 2007-01-19
> MXO02154.3prime
ATGGTCTAGAAAGCTTGCTTCGGAGGGGGTGAGATCGTTTTCAGGTTCGT
TTTCGTTGAGAATTTGAGAAAGCAGATCGTAGAGTGGTTCTAATATCTTT
TTCGCTCCAGCATTGGTTAGATTTTTATAGTCGAACATATCGTGATGACT
GATACTGCCGTCGGTCTGGACCAAACCCTTGTCAATGGCCACCGTCTGGA
CGCGATACAAGCCCTTGGTCAATCCATTGACCACCTCGTTGATTTTGGCA
TTCTTTTCGCGCAACTTATTGGGCTGCTGGCCACGCGGCAGTAGCGAGGG
CAAAACGATATAGGCGTTGGGCAGCTTTTGCCGGATTTTCGTTACGTTCG
CGAGCACACCCTCGGCCACTTCCTCCGCGCTGTTCCGCACATTATTGGTG
CCCACATGGAGGACGACGATTTTGGGATTCACATTGTCCAGCGCACCGTT
TTCGATGCGCCACAGTACGTGCTCGGTGCAGTCGTCGCGAATGCTGAAGT
TAAGGCAGTGCAGCGGCGCAAAGTACTTATTCCAGGCCTCCGTGTCCTGG
ACGGTCTCGAAGATGCAGTCGCCGAGGAATATCACATCCGGATCCTTTTC
GCGGCAATCGGAGATGAACCGGCGATGTATGCTGTGCCAACGCTTGTCGC
CATCCAGATCGGGCAATGGGGTGGGCAGCACACAGGGATTCATGTCGAC
MXO02154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8962-PA | 678 | Paf-AHalpha-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
| CG8962-PB | 678 | Paf-AHalpha-RB | 1..675 | 693..19 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1126 | 697..19 | 3380 | 99.9 | Minus |
| Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1198 | 697..19 | 3380 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15784665..15785064 | 298..697 | 1985 | 99.8 | Plus |
| X | 23542271 | X | 15784318..15784596 | 19..297 | 1395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:49 has no hits.
MXO02154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:45 Download gff for
MXO02154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8962-PB | 1..678 | 15..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:30 Download gff for
MXO02154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 518..1201 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:51 Download gff for
MXO02154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 518..1201 | 15..699 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:51 Download gff for
MXO02154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15784314..15784596 | 15..297 | 99 | <- | Plus |
| X | 15784665..15785066 | 298..699 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:30 Download gff for
MXO02154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15678347..15678629 | 15..297 | 99 | <- | Plus |
| arm_X | 15678698..15679099 | 298..699 | 99 | | Plus |
MXO02154.5prime Sequence
699 bp (699 high quality bases) assembled on 2007-01-19
> MXO02154.5prime
CAGTCGACATGAATCCCTGTGTGCTGCCCACCCCATTGCCCGATCTGGAT
GGCGACAAGCGTTGGCACAGCATACATCGCCGGTTCATCTCCGATTGCCG
CGAAAAGGATCCGGATGTGATATTCCTCGGCGACTGCATCTTCGAGACCG
TCCAGGACACGGAGGCCTGGAATAAGTACTTTGCGCCGCTGCACTGCCTT
AACTTCAGCATTCGCGACGACTGCACCGAGCACGTACTGTGGCGCATCGA
AAACGGTGCGCTGGACAATGTGAATCCCAAAATCGTCGTCCTCCATGTGG
GCACCAATAATGTGCGGAACAGCGCGGAGGAAGTGGCCGAGGGTGTGCTC
GCGAACGTAACGAAAATCCGGCAAAAGCTGCCCAACGCCTATATCGTTTT
GCCCTCGCTACTGCCGCGTGGCCAGCAGCCCAATAAGTTGCGCGAAAAGA
ATGCCAAAATCAACGAGGTGGTCAATGGATTGACCAAGGGCTTGTATCGC
GTCCAGACGGTGGCCATTGACAAGGGTTTGGTCCAGACCGACGGCAGTAT
CAGTCATCACGATATGTTCGACTATAAAAATCTAACCAATGCTGGAGCGA
AAAAGATATTAGAACCACTCTACGATCTGCTTTCTCAAATTCTCAACGAA
AACGAACCTGAAAACGATCTCACCCCCTCCGAAGCAAGCTTTCTAGACC
MXO02154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8962-PA | 678 | Paf-AHalpha-RA | 1..675 | 9..683 | 3375 | 100 | Plus |
| CG8962-PB | 678 | Paf-AHalpha-RB | 1..675 | 9..683 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1126 | 5..683 | 3380 | 99.9 | Plus |
| Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1198 | 5..683 | 3380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15784665..15785064 | 404..5 | 1985 | 99.8 | Minus |
| X | 23542271 | X | 15784318..15784596 | 683..405 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:56 has no hits.
MXO02154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:45 Download gff for
MXO02154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8962-PB | 1..678 | 9..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:32 Download gff for
MXO02154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 516..1201 | 1..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:54 Download gff for
MXO02154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 516..1201 | 1..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:54 Download gff for
MXO02154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15784314..15784596 | 405..687 | 99 | <- | Minus |
| X | 15784665..15785067 | 1..404 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:32 Download gff for
MXO02154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15678347..15678629 | 405..687 | 99 | <- | Minus |
| arm_X | 15678698..15679100 | 1..404 | 99 | | Minus |
