Clone MXO02155 Report

Search the DGRC for MXO02155

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:55
Vector:pMK33-CTAP-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02155.3prime Sequence

838 bp (659 high quality bases) assembled on 2007-01-19

> MXO02155.3prime
ATGGTCTAGAAAGCTTGCGTACCATTTGGACTCCTCCTTGTCAGCGAGCA
GAGGTCTCCGCACCGCATCCCCACCATCGAGATGGTGGGGACCACGACTG
CCATTGTCGTCCTTTCCAGACAGTCGCTGGTACTGGCTTCCCTCTCTGCT
GGGCCACCTGACCAGTGGTATGCCGGCATCAGGGCAGAAGATGGAGGGAT
AGTATTGTGTGTAGCTTATATAGCCTGCAAACAGGCCAATCAGCCCGCCG
ATGGTCACATCCTGCCAGTGGTGGTGGTAGTCGCAGGTGCGACTAACTGC
AACCAGCAGTGCGATAAACAGAGGTATCACAGCGATGCAGAGCCGCCTGT
CTCTTGTGTACCAGTAGAAGGCGATAGTGACCAGAAAGGGAGCCACTATC
ACCCAGAAGAGCAGCTCCCCGCCCCTGACAATGTCCGGTCGCCTTGGGTT
CTTGTATAGCCACAGCTCTTCCTCGTGGATTTCCCGTTTGAATGCTGTCA
TCGTCTCCAACTTGAAGAAGGTAATGACGAGGAGAACGCGAAGAACAACA
TCTACGGCATCGCTGAGCTTCGCATTAGAGTTTCCTGTTCTGTGGCTTCG
TTCCTCTCGCTTTTCTGGCTGAACGGAGCTGCTGTCCGTGTTCATAGCAA
GTTCATTGCGCCACATTTCGTCGTCGTTGGTCCTGGTCCTCGATCCTGTA
TTCCTGACGTCCTCTGCGGAACTGTCGCTGAGGGTTCGCCTGGATTCTTG
ACCTTCCTTGCTCGCACCCATTTCGTTAGTCCGTTGGGTATATTCGGTTG
TCAGCTTAGGCCTGGTGCTTGTCGCCTGCTCCTTGCCT

MXO02155.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PA 903 CG12746-RA 81..900 838..19 4050 99.7 Minus
CG12746-PC 1239 CG12746-RC 81..576 838..343 2430 99.5 Minus
CG12746-PB 1092 CG12746-RB 6..429 766..343 2120 100 Minus
CG12746-PD 1092 CG12746-RD 6..429 766..343 2120 100 Minus
CG12746-PC 1239 CG12746-RC 908..1236 347..19 1645 100 Minus
CG12746-PB 1092 CG12746-RB 761..1089 347..19 1645 100 Minus
CG12746-PD 1092 CG12746-RD 761..1089 347..19 1645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 276..771 838..343 2450 99.6 Minus
CG12746-RD 1381 CG12746-RD 161..643 825..343 2385 99.6 Minus
CG12746-RB 1339 CG12746-RB 119..601 825..343 2385 99.6 Minus
CG12746-RE 1509 CG12746-RE 1103..1431 347..19 1645 100 Minus
CG12746-RD 1381 CG12746-RD 975..1303 347..19 1645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5567029..5567357 347..19 1645 100 Minus
3R 32079331 3R 5566086..5566398 827..515 1535 99.4 Minus
3R 32079331 3R 5566467..5566638 514..343 860 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:17:52 has no hits.

MXO02155.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:46 Download gff for MXO02155.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 81..903 15..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:17 Download gff for MXO02155.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 276..773 342..838 99 <- Minus
CG12746-RE 1109..1441 10..341 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:27 Download gff for MXO02155.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 276..773 342..838 99 <- Minus
CG12746-RE 1109..1441 10..341 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:27 Download gff for MXO02155.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5566467..5566640 342..514 98 <- Minus
3R 5566086..5566398 515..827 99 -> Minus
3R 5567035..5567367 10..341 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:17 Download gff for MXO02155.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1392757..1393089 10..341 99   Minus
arm_3R 1391808..1392120 515..827 99 -> Minus
arm_3R 1392189..1392362 342..514 98 <- Minus

MXO02155.5prime Sequence

851 bp (700 high quality bases) assembled on 2007-01-19

> MXO02155.5prime
CAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTCGCCGCCGC
GAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGCAAGGAGCA
GGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCAACGGACTA
ACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAACCCTCAGC
GACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACCAGGACCAA
CGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGACAGCAGCT
CCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAGGAAACTCT
AATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTTCTCCTCGT
CATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACGGGAAATCC
ACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGGACATTGTC
AGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTTCTGGTCAC
TATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCATCGCTGTGA
TACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCTGCGACTAC
CACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGCCTGTTTGC
AGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTGCCCTGATG
CCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCCAGTACCAG
CGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCGCCACCATCTCGA
T

MXO02155.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PA 903 CG12746-RA 1..843 9..851 4190 99.8 Plus
CG12746-PC 1239 CG12746-RC 1..576 9..584 2880 100 Plus
CG12746-PB 1092 CG12746-RB 1..429 156..584 2145 100 Plus
CG12746-PD 1092 CG12746-RD 1..429 156..584 2145 100 Plus
CG12746-PC 1239 CG12746-RC 908..1179 580..851 1335 99.6 Plus
CG12746-PB 1092 CG12746-RB 761..1032 580..851 1335 99.6 Plus
CG12746-PD 1092 CG12746-RD 761..1032 580..851 1335 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 196..771 9..584 2880 100 Plus
CG12746-RD 1381 CG12746-RD 161..643 102..584 2415 100 Plus
CG12746-RB 1339 CG12746-RB 119..601 102..584 2415 100 Plus
CG12746-RE 1509 CG12746-RE 1103..1374 580..851 1345 99.6 Plus
CG12746-RD 1381 CG12746-RD 975..1246 580..851 1345 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566086..5566398 100..412 1565 100 Plus
3R 32079331 3R 5567029..5567300 580..851 1345 99.6 Plus
3R 32079331 3R 5566467..5566638 413..584 860 100 Plus
3R 32079331 3R 5565361..5565454 9..102 470 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:51:35 has no hits.

MXO02155.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:46 Download gff for MXO02155.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-PA 1..843 9..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:38 Download gff for MXO02155.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 3..585 99 <- Plus
CG12746-RE 1109..1374 586..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:12 Download gff for MXO02155.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 3..585 99 <- Plus
CG12746-RE 1109..1374 586..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:12 Download gff for MXO02155.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5567030..5567300 581..851 99   Plus
3R 5565355..5565453 3..101 97 -> Plus
3R 5566088..5566398 102..412 100 -> Plus
3R 5566467..5566634 413..580 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:38 Download gff for MXO02155.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1392189..1392356 413..580 100 -> Plus
arm_3R 1391077..1391175 3..101 97 -> Plus
arm_3R 1391810..1392120 102..412 100 -> Plus
arm_3R 1392752..1393022 581..851 99   Plus