MXO02156.3prime Sequence
755 bp (737 high quality bases) assembled on 2007-01-19
> MXO02156.3prime
ATGGTCTAGAAAGCTTGCGGCTATTGAGGTGACGTCGATCGGCTCAGATT
CTGTATTTTGAAAAGTGATAGTTCCTTCCGAATCAATTGACGGTCCAATC
GACAAGCTTTCCGAATTAATTTGATCACACCTTACCCAGCTCTCATTCAT
CTCTGTCTCTGGACAGTTTACCTGATCGTCAGGCTCTTGAGTCGACGTGG
GTCGTACTAATGTGCTCAATTGGGTGCCAAACATATAGTAGTCCGGATCA
GACTCCGTATTCCGGAAACTGTTATTTGCTTGCGAATTTATACATCCAGT
CCGCATCCTTCCTAAATTAATTGGATCACATCTCACCGAATTCTCATTAA
TCTCTGTCTCTGGACGGTTGATGTTCTCATCCTGAAATCCTGACTGCTGC
TGTTCGTCCTCATCGTCTCCGATGCCGCTAAGATCAGATGACGACACGCC
TGGCGGAGCCATCGCTTCCACTTGAAAGTTCATTTGAGACAGTGAACTAA
GATTTGTGTTTGCTTGGTCCTCGTGGCTCTGCACCGCGTCATTAGAAGAT
GCATGAGCGTCTGGAGAGGATTCTGGTGCTGATAGGTTTTGACTCTTTTT
CTTTTGCCATCTATCCAATCGGCTGATGTTCTGCTTCTTAGTCTCGGCTG
CAACTATTTCTCTTCGCTGGGCCACACACTCCTCCGGATACGGTTGGACC
ATCTTTCTGCGCACCGCTTCCATATACCTTCGGTTGATGACTCTCTCAGA
CTTGT
MXO02156.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6219-PE | 1032 | cav-RE | 293..1029 | 755..19 | 3585 | 99.4 | Minus |
CG6219-PD | 1014 | cav-RD | 275..1011 | 755..19 | 3585 | 99.4 | Minus |
CG6219-PA | 1038 | cav-RA | 299..1035 | 755..19 | 3585 | 99.4 | Minus |
CG6219-PB | 1014 | cav-RB | 275..1011 | 755..19 | 3585 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RB | 1226 | CG6219-RB | 382..1118 | 755..19 | 3625 | 99.5 | Minus |
cav-RA | 1520 | CG6219-RA | 676..1412 | 755..19 | 3625 | 99.5 | Minus |
cav-RD | 1649 | CG6219-RD | 805..1541 | 755..19 | 3625 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24222684..24223420 | 755..19 | 3625 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:49:07 has no hits.
MXO02156.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:46 Download gff for
MXO02156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6219-PB | 275..1014 | 16..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:11 Download gff for
MXO02156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RD | 805..1541 | 19..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:55 Download gff for
MXO02156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RD | 805..1541 | 19..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:55 Download gff for
MXO02156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24222684..24223419 | 20..755 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:11 Download gff for
MXO02156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20048406..20049141 | 20..755 | 99 | <- | Minus |
MXO02156.5prime Sequence
855 bp (805 high quality bases) assembled on 2007-01-19
> MXO02156.5prime
CAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGACGCAAATG
TCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAAATTCGTGC
GCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATGGATGCACG
AAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACACCGAGGAC
GAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGATATGACCGC
TTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAAAGGACGTT
TTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGAAAGCGGTG
CGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCCCAGCGAAG
AGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCGATTGGATA
GATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAATCCTCTCCA
GACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAGGACCAAGC
AAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGTGGAAGCGA
TGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCGGAGACGAT
GAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATCAACCGTCC
AGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAATTAATTTAG
GAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACAGTTTCCGG
AATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAATTGAGCAC
ATTAG
MXO02156.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6219-PA | 1038 | cav-RA | 1..847 | 9..855 | 4235 | 100 | Plus |
CG6219-PE | 1032 | cav-RE | 13..841 | 27..855 | 4145 | 100 | Plus |
CG6219-PD | 1014 | cav-RD | 1..823 | 33..855 | 4115 | 100 | Plus |
CG6219-PB | 1014 | cav-RB | 1..823 | 33..855 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cav-RA | 1520 | CG6219-RA | 378..1224 | 9..855 | 4235 | 100 | Plus |
cav-RD | 1649 | CG6219-RD | 523..1353 | 25..855 | 4155 | 100 | Plus |
cav-RB | 1226 | CG6219-RB | 102..930 | 27..855 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24222535..24223232 | 158..855 | 3490 | 100 | Plus |
3R | 32079331 | 3R | 24222343..24222474 | 27..158 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:37 has no hits.
MXO02156.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:47 Download gff for
MXO02156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6219-PA | 1..847 | 9..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:52 Download gff for
MXO02156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1224 | 9..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:30 Download gff for
MXO02156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cav-RA | 378..1224 | 9..855 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:30 Download gff for
MXO02156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24222343..24222474 | 27..158 | 100 | -> | Plus |
3R | 24221908..24221925 | 9..26 | 100 | -> | Plus |
3R | 24222536..24223232 | 159..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:52 Download gff for
MXO02156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20047630..20047647 | 9..26 | 100 | -> | Plus |
arm_3R | 20048065..20048196 | 27..158 | 100 | -> | Plus |
arm_3R | 20048258..20048954 | 159..855 | 100 | | Plus |