Clone MXO02156 Report

Search the DGRC for MXO02156

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:56
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptcav-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02156.3prime Sequence

755 bp (737 high quality bases) assembled on 2007-01-19

> MXO02156.3prime
ATGGTCTAGAAAGCTTGCGGCTATTGAGGTGACGTCGATCGGCTCAGATT
CTGTATTTTGAAAAGTGATAGTTCCTTCCGAATCAATTGACGGTCCAATC
GACAAGCTTTCCGAATTAATTTGATCACACCTTACCCAGCTCTCATTCAT
CTCTGTCTCTGGACAGTTTACCTGATCGTCAGGCTCTTGAGTCGACGTGG
GTCGTACTAATGTGCTCAATTGGGTGCCAAACATATAGTAGTCCGGATCA
GACTCCGTATTCCGGAAACTGTTATTTGCTTGCGAATTTATACATCCAGT
CCGCATCCTTCCTAAATTAATTGGATCACATCTCACCGAATTCTCATTAA
TCTCTGTCTCTGGACGGTTGATGTTCTCATCCTGAAATCCTGACTGCTGC
TGTTCGTCCTCATCGTCTCCGATGCCGCTAAGATCAGATGACGACACGCC
TGGCGGAGCCATCGCTTCCACTTGAAAGTTCATTTGAGACAGTGAACTAA
GATTTGTGTTTGCTTGGTCCTCGTGGCTCTGCACCGCGTCATTAGAAGAT
GCATGAGCGTCTGGAGAGGATTCTGGTGCTGATAGGTTTTGACTCTTTTT
CTTTTGCCATCTATCCAATCGGCTGATGTTCTGCTTCTTAGTCTCGGCTG
CAACTATTTCTCTTCGCTGGGCCACACACTCCTCCGGATACGGTTGGACC
ATCTTTCTGCGCACCGCTTCCATATACCTTCGGTTGATGACTCTCTCAGA
CTTGT

MXO02156.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6219-PE 1032 cav-RE 293..1029 755..19 3585 99.4 Minus
CG6219-PD 1014 cav-RD 275..1011 755..19 3585 99.4 Minus
CG6219-PA 1038 cav-RA 299..1035 755..19 3585 99.4 Minus
CG6219-PB 1014 cav-RB 275..1011 755..19 3585 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RB 1226 CG6219-RB 382..1118 755..19 3625 99.5 Minus
cav-RA 1520 CG6219-RA 676..1412 755..19 3625 99.5 Minus
cav-RD 1649 CG6219-RD 805..1541 755..19 3625 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24222684..24223420 755..19 3625 99.5 Minus
Blast to na_te.dros performed on 2014-11-28 21:49:07 has no hits.

MXO02156.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:46 Download gff for MXO02156.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6219-PB 275..1014 16..755 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:11 Download gff for MXO02156.3prime
Subject Subject Range Query Range Percent Splice Strand
cav-RD 805..1541 19..755 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:55 Download gff for MXO02156.3prime
Subject Subject Range Query Range Percent Splice Strand
cav-RD 805..1541 19..755 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:55 Download gff for MXO02156.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24222684..24223419 20..755 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:11 Download gff for MXO02156.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20048406..20049141 20..755 99 <- Minus

MXO02156.5prime Sequence

855 bp (805 high quality bases) assembled on 2007-01-19

> MXO02156.5prime
CAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGACGCAAATG
TCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAAATTCGTGC
GCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATGGATGCACG
AAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACACCGAGGAC
GAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGATATGACCGC
TTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAAAGGACGTT
TTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGAAAGCGGTG
CGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCCCAGCGAAG
AGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCGATTGGATA
GATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAATCCTCTCCA
GACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAGGACCAAGC
AAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGTGGAAGCGA
TGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCGGAGACGAT
GAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATCAACCGTCC
AGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAATTAATTTAG
GAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACAGTTTCCGG
AATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAATTGAGCAC
ATTAG

MXO02156.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6219-PA 1038 cav-RA 1..847 9..855 4235 100 Plus
CG6219-PE 1032 cav-RE 13..841 27..855 4145 100 Plus
CG6219-PD 1014 cav-RD 1..823 33..855 4115 100 Plus
CG6219-PB 1014 cav-RB 1..823 33..855 4115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
cav-RA 1520 CG6219-RA 378..1224 9..855 4235 100 Plus
cav-RD 1649 CG6219-RD 523..1353 25..855 4155 100 Plus
cav-RB 1226 CG6219-RB 102..930 27..855 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24222535..24223232 158..855 3490 100 Plus
3R 32079331 3R 24222343..24222474 27..158 660 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:15:37 has no hits.

MXO02156.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:47 Download gff for MXO02156.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6219-PA 1..847 9..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:52 Download gff for MXO02156.5prime
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1224 9..855 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:30 Download gff for MXO02156.5prime
Subject Subject Range Query Range Percent Splice Strand
cav-RA 378..1224 9..855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:30 Download gff for MXO02156.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24222343..24222474 27..158 100 -> Plus
3R 24221908..24221925 9..26 100 -> Plus
3R 24222536..24223232 159..855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:52 Download gff for MXO02156.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20047630..20047647 9..26 100 -> Plus
arm_3R 20048065..20048196 27..158 100 -> Plus
arm_3R 20048258..20048954 159..855 100   Plus