MXO02157.3prime Sequence
718 bp (692 high quality bases) assembled on 2007-01-19
> MXO02157.3prime
ATGGTCTAGAAAGCTTGCGTAGGAGGCCAGGCACTGCAAGACGTAGCTGT
AGTCTCCGGAGAGGTCGTCCTTGATCCAGGACTCCAAGCTCTTGCCGTAC
TTGTTCTGGAATGCCTCCTTGATGTCACCCAGATCGATCTCCGACCGGCT
GACAATGATGCGGATCAGCGTCTTGTCCTTGGTGCCCATGCCGGCCATTG
AGTCGTGCAGGCGCTCCGAAAAGTAGTCGATCTTGGACTTGCAGCACTTG
ACGATGGCCAGGAAACCCTTCTCCACGGAGCCGCTAAACTCCCGCTTGAT
GGCCTTCTCGATGTCGTTGCCCGACAGATTCTCGTATTCGAGGAAGATCT
GGCGCAGCTGCTGGTAGGAGCGGGTGATCAGGATCGAGTTGAAGGTGGAC
TCATCTGTGCCCCACTGTCCCTCGCCGGCGTCGTGCAGAGCCTGGGCATC
GGCGATGGCCGCGGCCTCGTCCACGCCCTGGTTCTCATCCCGGTTGCCCT
GGACGAGCGAGACACACAGCCGCTTGAAGTGGCCACTGGTGTCGCCCTTC
AGGTCGGACTCTAGGGACTTGCCGAAGCTCTGCTCGTAGAACTGGGCAAT
GGTCTTGATGCCGTAGTTGGACAGCGTGCAGAGGATCTCGATGATGGCCT
CCTCCTCGGTTCCCAGTCCCGAGATGGCGTCGTGCACCTCCTGGGCATAG
AACTGGGGCAGCGGCGTC
MXO02157.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5730-PD | 975 | AnnIX-RD | 273..972 | 718..19 | 3450 | 99.7 | Minus |
| CG5730-PB | 975 | AnnIX-RB | 273..972 | 718..19 | 3450 | 99.7 | Minus |
| CG5730-PA | 975 | AnnIX-RA | 273..923 | 718..68 | 3205 | 99.6 | Minus |
| CG5730-PC | 975 | AnnIX-RC | 273..922 | 718..69 | 3200 | 99.6 | Minus |
| CG9968-PA | 969 | Anxb11-RA | 307..357 | 666..616 | 155 | 92.1 | Minus |
| CG9968-PB | 1536 | Anxb11-RB | 874..924 | 666..616 | 155 | 92.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB9-RB | 1184 | CG5730-RB | 342..1041 | 718..19 | 3470 | 99.7 | Minus |
| AnxB9-RD | 1300 | CG5730-RD | 458..1157 | 718..19 | 3470 | 99.7 | Minus |
| AnxB9-RF | 1457 | CG5730-RF | 367..1020 | 718..65 | 3225 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21068311..21068777 | 718..252 | 2305 | 99.6 | Minus |
| 3R | 32079331 | 3R | 21068837..21069020 | 252..69 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 21070722..21070774 | 71..19 | 265 | 100 | Minus |
| X | 23542271 | X | 16418705..16418772 | 616..683 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:52 has no hits.
MXO02157.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:47 Download gff for
MXO02157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5730-PB | 273..975 | 15..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:06 Download gff for
MXO02157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RD | 458..1167 | 9..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:25 Download gff for
MXO02157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RD | 458..1167 | 9..718 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:25 Download gff for
MXO02157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21068311..21068777 | 252..718 | 99 | -> | Minus |
| 3R | 21068838..21069019 | 70..251 | 100 | -> | Minus |
| 3R | 21070724..21070784 | 9..69 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:06 Download gff for
MXO02157.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16894033..16894499 | 252..718 | 99 | -> | Minus |
| arm_3R | 16894560..16894741 | 70..251 | 100 | -> | Minus |
| arm_3R | 16896446..16896506 | 9..69 | 93 | | Minus |
MXO02157.5prime Sequence
885 bp (779 high quality bases) assembled on 2007-01-19
> MXO02157.5prime
CAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCACACCCACT
GTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCTATTCTGCG
CAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCATCGAGATCC
TGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGGCGTTCAAG
ACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAACTGGGCGG
CAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCCCCAGTTCT
ATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCGACGAGGAG
GCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATCAAGACCAT
TGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTCCGACCTGA
AGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGCTCGTCCAG
GGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCCATCGCCGA
TGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCACAGATGAGT
CCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGCTGCGCCAG
ATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAGAAGGCCAT
CAAGCGGGAGTTTAGCGGCTCCGTGGAGAAGGGTTTCCTGGCCATCGTCA
AGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGCACGACTCA
ATGGCCGGCATGGGCACCAAGACAAGACGCTGATCCGCATCATTGTCAGC
CGGTCGGAGATCGATCTGGGTGACATCAAAGAGGC
MXO02157.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5730-PD | 975 | AnnIX-RD | 1..878 | 9..885 | 4325 | 99.7 | Plus |
| CG5730-PA | 975 | AnnIX-RA | 1..878 | 9..885 | 4325 | 99.7 | Plus |
| CG5730-PB | 975 | AnnIX-RB | 1..878 | 9..885 | 4325 | 99.7 | Plus |
| CG5730-PC | 975 | AnnIX-RC | 1..878 | 9..885 | 4325 | 99.7 | Plus |
| CG9968-PA | 969 | Anxb11-RA | 307..357 | 333..383 | 180 | 94.1 | Plus |
| CG9968-PB | 1536 | Anxb11-RB | 874..924 | 333..383 | 180 | 94.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB9-RF | 1457 | CG5730-RF | 95..972 | 9..885 | 4350 | 99.8 | Plus |
| AnxB9-RE | 1456 | CG5730-RE | 94..971 | 9..885 | 4350 | 99.8 | Plus |
| AnxB9-RC | 1432 | CG5730-RC | 70..947 | 9..885 | 4350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21068067..21068777 | 37..747 | 3555 | 100 | Plus |
| 3R | 32079331 | 3R | 21068837..21068976 | 747..885 | 635 | 98.6 | Plus |
| X | 23542271 | X | 16418705..16418779 | 383..309 | 225 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:49:17 has no hits.
MXO02157.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:48 Download gff for
MXO02157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5730-PC | 1..878 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:16 Download gff for
MXO02157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 62..947 | 1..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:02 Download gff for
MXO02157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 62..947 | 1..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:02 Download gff for
MXO02157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21067462..21067499 | 1..38 | 92 | -> | Plus |
| 3R | 21068069..21068777 | 39..747 | 100 | -> | Plus |
| 3R | 21068838..21068976 | 748..885 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:16 Download gff for
MXO02157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16893184..16893221 | 1..38 | 92 | -> | Plus |
| arm_3R | 16893791..16894499 | 39..747 | 100 | -> | Plus |
| arm_3R | 16894560..16894698 | 748..885 | 98 | | Plus |
