MXO02163.3prime Sequence
821 bp (711 high quality bases) assembled on 2007-01-19
> MXO02163.3prime
ATGGTCTAGAAAGCTTGCTTTCCGGCTGCCAAAGAGTTTGCCGCGCGCAT
GCGATGTGGCTGGGGACAGAGCGTGCGAACTGGCGTGCCGTTTGATGCGC
GGAGTATCCCTTAGCTCTGAACCAGATGCGGAGGAGGCACTTGTGCAGGC
ATTTGAATTGGCCGTCACATTGGTCAGGGTGGACACTCCGCTGCACGAAT
CCCCTGTGGTTGGCATTGATTTGTAGCGCTGCAGCGAGGTGCGCGGCTTC
TTCGGCATTGTGGCCTGCTGCACTGCCTCTTCTAGGGCGTTTAGCCAGTC
CTCGCCCTCGCTTTCGTCTTCCAGAAATTTCATGTAGAAGGAGGGTCGCT
TTGCCGTGTGGTGCCTAGTGGGTGTGGTGCTTGTGCTTGATTTGGGAGGT
TCATGGTGTTCTATTTTCGACTCCAGTTGCTGGGAGGCCTCAAGCAGGAA
GAGATCCGTCTCCGAGTCGTTGAGGAAGTCTGCCATTGGATCGGAGGCAG
CTACAGGGGAAAGCACTGGCTCTGGCGTAGCCTTCGTGCAGGTTAATCTT
GTGCGGGGAGCAACAGGTGACGGAGCTTTAGGAGTTTTTAGTGGCATTAC
TGGTTCGGACACAGCTATTTGCTCCAACTGGCTATTGAGCCTAGCACAGC
GCTCCTTAAGAAGACCATTAGCCCGCATCTGCTGTGCCCGCCACTGCTCA
TTGTCCAGTTGGCTGCGTCTATCCTCGACGCCCTTAAAGGCTATCTGCCG
GCGTCGTTCGCGCTGGCTCAAACTGCCTATTTCCGCGGAGTCGAAGCCAC
TGTCCGTGGTGGCATTGCTGC
MXO02163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6425-PA | 1122 | CG6425-RA | 317..1119 | 821..19 | 3990 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6425-RA | 2101 | CG6425-RA | 442..1244 | 821..19 | 4000 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26716116..26716889 | 48..821 | 3855 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:09 has no hits.
MXO02163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:51 Download gff for
MXO02163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-PA | 317..1122 | 16..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:19 Download gff for
MXO02163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 442..1248 | 15..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:34 Download gff for
MXO02163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 442..1248 | 15..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:34 Download gff for
MXO02163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26716017..26716050 | 15..47 | 94 | <- | Plus |
| 3R | 26716116..26716889 | 48..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:19 Download gff for
MXO02163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22541739..22541772 | 15..47 | 94 | <- | Plus |
| arm_3R | 22541838..22542611 | 48..821 | 99 | | Plus |
MXO02163.5prime Sequence
760 bp (758 high quality bases) assembled on 2007-01-19
> MXO02163.5prime
CAGTCGACATGGAGAACGCACTTAAACGGCGATCTTTAACGCTCAGCACG
CGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTACGCACAGG
GCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAACTCCTCAG
CAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCACACAAACAC
AAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTGGACATCAG
CCTTTCGCCCAGCTGCCTCTTCTCCCAGACACTGGCCACCGAAAGTCCGG
AGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGGACAGTGGC
TTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGACGCCGGCA
GATAGCCTTTAAGGGCGTCGAGGATAGACGCAGCCAACTGGACAATGAGC
AGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGGAGCGCTGT
GCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAACCAGTAAT
GCCACTAAAAACTCCTAAAGCTCCGTCACCTGTTGCTCCCCGCACAAGAT
TAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTGTAGCTGCC
TCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACGGATCTCTTCCT
GCTTGAGGCCTCCCAGCAACTGGAGTCGAAAATAGAACACCATGAACCTC
CCAAATCAAG
MXO02163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6425-PA | 1122 | CG6425-RA | 1..752 | 9..760 | 3760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6425-RA | 2101 | CG6425-RA | 126..877 | 9..760 | 3760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26716454..26717139 | 760..75 | 3430 | 100 | Minus |
| 3R | 32079331 | 3R | 26717198..26717264 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:35 has no hits.
MXO02163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:51 Download gff for
MXO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-PA | 1..752 | 9..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:00 Download gff for
MXO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 122..877 | 2..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:45 Download gff for
MXO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 122..877 | 2..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:45 Download gff for
MXO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26716454..26717138 | 76..760 | 100 | <- | Minus |
| 3R | 26717198..26717268 | 2..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:00 Download gff for
MXO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22542176..22542860 | 76..760 | 100 | <- | Minus |
| arm_3R | 22542920..22542990 | 2..75 | 94 | | Minus |
