Clone MXO02164 Report

Search the DGRC for MXO02164

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:64
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptbond-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02164.3prime Sequence

863 bp (812 high quality bases) assembled on 2007-01-19

> MXO02164.3prime
ATGGTCTAGAAAGCTTGCTTCCAGCTTCATGGGCTTCACGCTGTTGTTGT
TCAGATCGATGTACGCCTTTCCGACCTGGCCATTCTGGAGCAGATGCTTA
CCGGCGTTCATGGTCTGCGGCATGCAACCCATACCGCCGGCGGCACGCAG
AGCGGATTGAGCCAAACTACTGCCGGTGGTGCGACTGCCTCCATCCACGG
ACTTGGCCTTCTTGTAGGTCTTGCGATAGAAATTGCCGAACAGGTAAAGG
AAGATGACCGTGTTGCCCACGAAGAAGAAGGTCAGTGTCTTGGGCATGTT
GCAGCCCTTGGCGCCCACGGTCAGCATGTAGCCCAGGATGAGGACGAACT
GGATCAGCTGGATGCTGGTCATGTACTTCTTCCACCACAGGTACTTCTGG
TACTGGGGTCCCATTGCGGCCACCATGTAGTAGAAGTACATGATAATGTG
CACGCCCGAGTTGAGAATGCCAATGATCACGCCCTGCTCGCCGGGAGCGT
ACTTCAGGTAGCCCCAGGAGAAGAGCACCGTGATGGTGTGATGGTACACG
TGTAGGAAGGACACCTGGTTGTCCTTCTTGCGCAGCACAAAGAACGTCGT
GTCCAGCAGATCGATGATCTTCGAGAAAAAGTAGAACCAGGCACCGGAAT
AGAGGGTCAGATTCTGCTCCCTGGTGCGGTTAATCTCGCACTTCTTCGAG
AAGATCGACGCCATCACATTGCTCTCTTGGATGGACGTGCGGCACATCCA
AATGGAGTACAAGACCTGAAAGGCATTATAGAACACCATGATGCGCTTGA
NGTCCATGGGCTTGCGATTCTTCATGTACTCGGGTCCGATTTTCAAAACA
AACGCCAGATAGA

MXO02164.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6921-PB 969 CG6921-RB 122..966 863..19 4181 99.7 Minus
CG6921-PA 969 CG6921-RA 122..966 863..19 4181 99.7 Minus
CG6921-PC 969 CG6921-RC 122..966 863..19 4181 99.7 Minus
CG33110-PA 1014 CG33110-RA 645..687 442..400 140 93 Minus
CG2781-PA 990 CG2781-RA 586..612 399..373 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 1503 CG6921-RC 285..1129 863..19 4199 99.8 Minus
bond-RA 1627 CG6921-RA 409..1253 863..19 4199 99.8 Minus
bond-RB 1605 CG6921-RB 387..1231 863..19 4199 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22555403..22556120 736..19 3590 100 Minus
3R 32079331 3R 22554886..22555013 863..736 614 98.4 Minus
3R 32079331 3R 22559621..22559876 366..621 365 76.2 Plus
3R 32079331 3R 7982833..7982946 341..454 315 85.1 Plus
3R 32079331 3R 4467636..4467744 359..467 290 84.4 Plus
3R 32079331 3R 22574801..22574887 453..367 255 86.2 Minus
3R 32079331 3R 4444123..4444211 366..454 220 83.1 Plus
3R 32079331 3R 9813350..9813433 621..538 195 82.1 Minus
3R 32079331 3R 22532980..22533064 366..450 185 81.2 Plus
Blast to na_te.dros performed on 2014-11-28 22:19:19 has no hits.

MXO02164.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:51 Download gff for MXO02164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PC 123..969 16..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:39 Download gff for MXO02164.3prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 388..1231 19..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:05 Download gff for MXO02164.3prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 388..1231 19..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:05 Download gff for MXO02164.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22554887..22555013 736..862 98 -> Minus
3R 22555404..22556120 19..735 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:39 Download gff for MXO02164.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18380609..18380735 736..862 98 -> Minus
arm_3R 18381126..18381842 19..735 100   Minus

MXO02164.5prime Sequence

834 bp (769 high quality bases) assembled on 2007-01-19

> MXO02164.5prime
CAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAATCTCCGGC
CTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTAATGAGCTC
ACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTTTGTTCTGA
AAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACCTCAAGCGC
ATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATTTGGATGTG
CCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTTCTCGAAGA
AGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCTATTCCGGT
GCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGACACGACGTT
CTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACACGTGTACC
ATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGTACGCTCCC
GGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTGCACATTAT
CATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTACCAGAAGT
ACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCCAGTTCGTC
CTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGCAACATGCC
CAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTTCCTTTACC
TGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGTCCGTGGAT
GGAGGCAGTCGCACCACCGGCAGTAGTTTGGCTC

MXO02164.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6921-PB 969 CG6921-RB 1..826 9..834 4130 100 Plus
CG6921-PA 969 CG6921-RA 1..826 9..834 4130 100 Plus
CG6921-PC 969 CG6921-RC 1..826 9..834 4130 100 Plus
CG33110-PA 1014 CG33110-RA 645..687 551..593 140 93 Plus
CG2781-PA 990 CG2781-RA 586..612 594..620 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
bond-RC 1503 CG6921-RC 164..989 9..834 4130 100 Plus
bond-RA 1627 CG6921-RA 288..1113 9..834 4130 100 Plus
bond-RB 1605 CG6921-RB 266..1091 9..834 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22555403..22555980 257..834 2890 100 Plus
3R 32079331 3R 22554822..22555013 66..257 960 100 Plus
3R 32079331 3R 22559621..22559876 627..372 365 76.2 Minus
3R 32079331 3R 7982833..7982946 652..539 315 85.1 Minus
3R 32079331 3R 4467636..4467744 634..526 290 84.4 Minus
3R 32079331 3R 22554700..22554757 9..66 290 100 Plus
3R 32079331 3R 22574801..22574887 540..626 255 86.2 Plus
3R 32079331 3R 4444123..4444211 627..539 220 83.1 Minus
3R 32079331 3R 9813350..9813433 372..455 195 82.1 Plus
3R 32079331 3R 22532980..22533064 627..543 185 81.2 Minus
Blast to na_te.dros performed on 2014-11-28 18:45:38 has no hits.

MXO02164.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:52 Download gff for MXO02164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6921-PC 1..826 9..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:02 Download gff for MXO02164.5prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 258..1091 1..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:46 Download gff for MXO02164.5prime
Subject Subject Range Query Range Percent Splice Strand
bond-RB 258..1091 1..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:46 Download gff for MXO02164.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22554823..22555013 67..257 100 -> Plus
3R 22554692..22554757 1..66 93 -> Plus
3R 22555404..22555980 258..834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:02 Download gff for MXO02164.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18380414..18380479 1..66 93 -> Plus
arm_3R 18380545..18380735 67..257 100 -> Plus
arm_3R 18381126..18381702 258..834 100   Plus