Clone Sequence Records
MXO02164.3prime Sequence
863 bp (812 high quality bases) assembled on 2007-01-19
> MXO02164.3prime
ATGGTCTAGAAAGCTTGCTTCCAGCTTCATGGGCTTCACGCTGTTGTTGT
TCAGATCGATGTACGCCTTTCCGACCTGGCCATTCTGGAGCAGATGCTTA
CCGGCGTTCATGGTCTGCGGCATGCAACCCATACCGCCGGCGGCACGCAG
AGCGGATTGAGCCAAACTACTGCCGGTGGTGCGACTGCCTCCATCCACGG
ACTTGGCCTTCTTGTAGGTCTTGCGATAGAAATTGCCGAACAGGTAAAGG
AAGATGACCGTGTTGCCCACGAAGAAGAAGGTCAGTGTCTTGGGCATGTT
GCAGCCCTTGGCGCCCACGGTCAGCATGTAGCCCAGGATGAGGACGAACT
GGATCAGCTGGATGCTGGTCATGTACTTCTTCCACCACAGGTACTTCTGG
TACTGGGGTCCCATTGCGGCCACCATGTAGTAGAAGTACATGATAATGTG
CACGCCCGAGTTGAGAATGCCAATGATCACGCCCTGCTCGCCGGGAGCGT
ACTTCAGGTAGCCCCAGGAGAAGAGCACCGTGATGGTGTGATGGTACACG
TGTAGGAAGGACACCTGGTTGTCCTTCTTGCGCAGCACAAAGAACGTCGT
GTCCAGCAGATCGATGATCTTCGAGAAAAAGTAGAACCAGGCACCGGAAT
AGAGGGTCAGATTCTGCTCCCTGGTGCGGTTAATCTCGCACTTCTTCGAG
AAGATCGACGCCATCACATTGCTCTCTTGGATGGACGTGCGGCACATCCA
AATGGAGTACAAGACCTGAAAGGCATTATAGAACACCATGATGCGCTTGA
NGTCCATGGGCTTGCGATTCTTCATGTACTCGGGTCCGATTTTCAAAACA
AACGCCAGATAGA
MXO02164.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6921-PB | 969 | CG6921-RB | 122..966 | 863..19 | 4181 | 99.7 | Minus |
CG6921-PA | 969 | CG6921-RA | 122..966 | 863..19 | 4181 | 99.7 | Minus |
CG6921-PC | 969 | CG6921-RC | 122..966 | 863..19 | 4181 | 99.7 | Minus |
CG33110-PA | 1014 | CG33110-RA | 645..687 | 442..400 | 140 | 93 | Minus |
CG2781-PA | 990 | CG2781-RA | 586..612 | 399..373 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 1503 | CG6921-RC | 285..1129 | 863..19 | 4199 | 99.8 | Minus |
bond-RA | 1627 | CG6921-RA | 409..1253 | 863..19 | 4199 | 99.8 | Minus |
bond-RB | 1605 | CG6921-RB | 387..1231 | 863..19 | 4199 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22555403..22556120 | 736..19 | 3590 | 100 | Minus |
3R | 32079331 | 3R | 22554886..22555013 | 863..736 | 614 | 98.4 | Minus |
3R | 32079331 | 3R | 22559621..22559876 | 366..621 | 365 | 76.2 | Plus |
3R | 32079331 | 3R | 7982833..7982946 | 341..454 | 315 | 85.1 | Plus |
3R | 32079331 | 3R | 4467636..4467744 | 359..467 | 290 | 84.4 | Plus |
3R | 32079331 | 3R | 22574801..22574887 | 453..367 | 255 | 86.2 | Minus |
3R | 32079331 | 3R | 4444123..4444211 | 366..454 | 220 | 83.1 | Plus |
3R | 32079331 | 3R | 9813350..9813433 | 621..538 | 195 | 82.1 | Minus |
3R | 32079331 | 3R | 22532980..22533064 | 366..450 | 185 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:19 has no hits.
MXO02164.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:51 Download gff for
MXO02164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PC | 123..969 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:39 Download gff for
MXO02164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 388..1231 | 19..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:05 Download gff for
MXO02164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 388..1231 | 19..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:05 Download gff for
MXO02164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22554887..22555013 | 736..862 | 98 | -> | Minus |
3R | 22555404..22556120 | 19..735 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:39 Download gff for
MXO02164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18380609..18380735 | 736..862 | 98 | -> | Minus |
arm_3R | 18381126..18381842 | 19..735 | 100 | | Minus |
MXO02164.5prime Sequence
834 bp (769 high quality bases) assembled on 2007-01-19
> MXO02164.5prime
CAGTCGACATGACGAACTACATAAAGATTGTCGAGGAGCGAATCTCCGGC
CTCTCAAAAGGAGTGGATGAGACGGTGGACAGCTGGTTCCTAATGAGCTC
ACCTATGCCCGTGGTGGCCGTGGTTCTCGTCTATCTGGCGTTTGTTCTGA
AAATCGGACCCGAGTACATGAAGAATCGCAAGCCCATGGACCTCAAGCGC
ATCATGGTGTTCTATAATGCCTTTCAGGTCTTGTACTCCATTTGGATGTG
CCGCACGTCCATCCAAGAGAGCAATGTGATGGCGTCGATCTTCTCGAAGA
AGTGCGAGATTAACCGCACCAGGGAGCAGAATCTGACCCTCTATTCCGGT
GCCTGGTTCTACTTTTTCTCGAAGATCATCGATCTGCTGGACACGACGTT
CTTTGTGCTGCGCAAGAAGGACAACCAGGTGTCCTTCCTACACGTGTACC
ATCACACCATCACGGTGCTCTTCTCCTGGGGCTACCTGAAGTACGCTCCC
GGCGAGCAGGGCGTGATCATTGGCATTCTCAACTCGGGCGTGCACATTAT
CATGTACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTACCAGAAGT
ACCTGTGGTGGAAGAAGTACATGACCAGCATCCAGCTGATCCAGTTCGTC
CTCATCCTGGGCTACATGCTGACCGTGGGCGCCAAGGGCTGCAACATGCC
CAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTTCCTTTACC
TGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGTCCGTGGAT
GGAGGCAGTCGCACCACCGGCAGTAGTTTGGCTC
MXO02164.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6921-PB | 969 | CG6921-RB | 1..826 | 9..834 | 4130 | 100 | Plus |
CG6921-PA | 969 | CG6921-RA | 1..826 | 9..834 | 4130 | 100 | Plus |
CG6921-PC | 969 | CG6921-RC | 1..826 | 9..834 | 4130 | 100 | Plus |
CG33110-PA | 1014 | CG33110-RA | 645..687 | 551..593 | 140 | 93 | Plus |
CG2781-PA | 990 | CG2781-RA | 586..612 | 594..620 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bond-RC | 1503 | CG6921-RC | 164..989 | 9..834 | 4130 | 100 | Plus |
bond-RA | 1627 | CG6921-RA | 288..1113 | 9..834 | 4130 | 100 | Plus |
bond-RB | 1605 | CG6921-RB | 266..1091 | 9..834 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22555403..22555980 | 257..834 | 2890 | 100 | Plus |
3R | 32079331 | 3R | 22554822..22555013 | 66..257 | 960 | 100 | Plus |
3R | 32079331 | 3R | 22559621..22559876 | 627..372 | 365 | 76.2 | Minus |
3R | 32079331 | 3R | 7982833..7982946 | 652..539 | 315 | 85.1 | Minus |
3R | 32079331 | 3R | 4467636..4467744 | 634..526 | 290 | 84.4 | Minus |
3R | 32079331 | 3R | 22554700..22554757 | 9..66 | 290 | 100 | Plus |
3R | 32079331 | 3R | 22574801..22574887 | 540..626 | 255 | 86.2 | Plus |
3R | 32079331 | 3R | 4444123..4444211 | 627..539 | 220 | 83.1 | Minus |
3R | 32079331 | 3R | 9813350..9813433 | 372..455 | 195 | 82.1 | Plus |
3R | 32079331 | 3R | 22532980..22533064 | 627..543 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:38 has no hits.
MXO02164.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:52 Download gff for
MXO02164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6921-PC | 1..826 | 9..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:02 Download gff for
MXO02164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 258..1091 | 1..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:46 Download gff for
MXO02164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bond-RB | 258..1091 | 1..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:46 Download gff for
MXO02164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22554823..22555013 | 67..257 | 100 | -> | Plus |
3R | 22554692..22554757 | 1..66 | 93 | -> | Plus |
3R | 22555404..22555980 | 258..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:02 Download gff for
MXO02164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18380414..18380479 | 1..66 | 93 | -> | Plus |
arm_3R | 18380545..18380735 | 67..257 | 100 | -> | Plus |
arm_3R | 18381126..18381702 | 258..834 | 100 | | Plus |