MXO02166.3prime Sequence
715 bp (706 high quality bases) assembled on 2007-01-19
> MXO02166.3prime
ATGGTCTAGAAAGCTTGCTACTGCTGCCGCAGCGAATCCTTTCCCCATAG
TGGCCTTGCTAATTACTTTGGTATTGGCTGCGATGGAATAATCCACCTGT
GTTTTCCCATTCTGATTTCTTACGAGCTCCGTCAGCTGTGGAAGCGTATC
TTTAGCCACACTCTCACGAATTTTTTCAAAGAAAGCCATGTAGTGATAAA
GGTTGTGAACCATCAGTAAGATGGGACCTAATAGTTCGTTGGTCTTGTAC
AGGTGGTGAAGGTAGGCACGCGTGTGTTTCTGGCAAGTCAAGCAATTGCA
GTTGCTCAGCGGCGGAGTAAAATCCTCCTTGATAGCTTCGTCGGTTATGT
CCAAGAAAGGCACATGCTCCACTGCATCCTGCACAAAACTAAATGACAAA
GCCTTGAAGTTTAGAGAAGCACAATATGCGTAGGAAGTGTCAAACACATC
GATTCCTTGTTGGATTAGTTCCAGAACGGTTAGGGGCGTGTATGCACCCG
GCAATATCTTAGGCTTGTCCTCCTCCAGCTGCTTGACGCAGTGCTCTACT
ATTGGCAGTAGTTTGGAAGTGTCCAAAGTGGTCGCTGATAGACCATTCGC
GTGGAAACCCTCGAAGATGTAACCTCCATAGCTTCCCGCTGGCTGTTCCC
GGGCATGTTTAATGGACTGCGTCCGAGCAAAGGTGTGTATCCGCCCACAT
GGGAGCTAGAGAGTG
MXO02166.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-PA | 1257 | CG3434-RA | 562..1254 | 709..19 | 3385 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-RA | 1372 | CG3434-RA | 637..1336 | 715..19 | 3425 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9459654..9460156 | 209..709 | 2415 | 99.6 | Plus |
| 3L | 28110227 | 3L | 9459405..9459594 | 19..208 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:13 has no hits.
MXO02166.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:53 Download gff for
MXO02166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-PA | 555..1257 | 16..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:50 Download gff for
MXO02166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 637..1336 | 19..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:41 Download gff for
MXO02166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 637..1336 | 19..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:41 Download gff for
MXO02166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9459405..9459594 | 19..208 | 100 | <- | Plus |
| 3L | 9459654..9460163 | 209..715 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:50 Download gff for
MXO02166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9452505..9452694 | 19..208 | 100 | <- | Plus |
| arm_3L | 9452754..9453263 | 209..715 | 99 | | Plus |
MXO02166.5prime Sequence
858 bp (769 high quality bases) assembled on 2007-01-19
> MXO02166.5prime
CAGTCGACATGAAATTTGCAATCGAGAGTATTAGCAAGAATTCTGGTCGA
CTAGGTCAACTGCGAATCAGGGATGGAGGACCCGAGTTCAAGACTCCCCT
TCTTTTGCAGACGACTAAGGGCGGAAGCATTCCGTGGCTGAGTGCGGATG
TTTTCGAGACTCATGTCAGCCGGAAGCCACAGGTGCTCCAATTCACACTG
TCCACAATGGAACAAATGACCGAGGCACTTACGCATTGGAACAGTGGTGG
GGGTCGCGGACTGAGCGACTACGTAGGACTACCAGGACATCTAAATATTC
TCCTGCTACGAGATCCCTGTGAAACAACGCCTTCCGGAGGTAACGACAGG
GATATACTGCCGTTGTTTACGAGAAGGGGCAAGGAATCGCTCTCTTCGGA
GCGCTACATGGAAATAGTAGCAAGTTTCAAGCCGGACATGTATGAGGGAC
TCTGCGATGCGGACACAAATTTAGAGAGTGCCAAGAAGCGGGTTCAGAAA
TCGGTTGACAGGACAGAGAAGTTTATGCAATACATCTACGAGCACCGGGG
CAAGGTGAATTCCACTCTGCTAGCTCCCATTGTGGGCGGATACAACACCT
TTGCTCGGACGCAGTCCATTAAACATGCCCGGGAACAGCCAGCGGGAAGC
TATGGAGGTTACATCTTCGAGGGTTTCCACGCGAATGGTCTATCAGCGAC
CACTTTGGACACTTCCAAACTACTGCCAATAGTAGAGCACTGCGTCAAGC
AGCTGGAGGAGGACAAGCCTAAGATATTGCCGGGTGCATACACGCCCCTA
ACCGTTCTGGAACTATCCAACAAGGAATCGATGTGTTTGACACTTCCTAC
GCATATTG
MXO02166.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-PA | 1257 | CG3434-RA | 1..851 | 9..858 | 4215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3434-RA | 1372 | CG3434-RA | 83..933 | 9..858 | 4230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9459867..9460717 | 858..9 | 4205 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:16 has no hits.
MXO02166.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:53 Download gff for
MXO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-PA | 1..851 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:21 Download gff for
MXO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 74..933 | 1..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:37 Download gff for
MXO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3434-RA | 74..933 | 1..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:37 Download gff for
MXO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9459867..9460721 | 1..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:21 Download gff for
MXO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9452967..9453821 | 1..858 | 99 | | Minus |
