Clone MXO02168 Report

Search the DGRC for MXO02168

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:68
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG6693-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02168.3prime Sequence

838 bp (703 high quality bases) assembled on 2007-01-19

> MXO02168.3prime
ATGGTCTAGAAAGCTTGCGTTTTTGCCCTTCTCCACACGGCCCGCCTTGA
CTCCATTGAGCTTCGGTTTGGTCTCCTGCTTGGCGGCGGGCTTCTTGGAC
TTCTTTTTCTTCTTCTCGAAGGCGCTGAAGTCAACAGTGTCGGAGTCGTC
CTCGTTGCCGTACTTCTCCATCAGGCGGTCCATTAGGGAGCCAAAGTTTG
ACTCGCGCTGATTGCGACGTGCCAGGATCATTTGCTGCAAATCGCCACCG
TTGTCGGCTAAATCCTGGTCGTCCTTCTCCTTCTGGCGGCGCTTCAAACG
CTCCTTGATCACCTTGGCCTCCTTGAATTCGCGCGCGTACTTCTGGTGGC
GCTTCTTGCGCTTGGCTGCCGGCTCCTCGGTAAAGATCTTGTACTCGGGC
ACCTCGCCGCTGGCAATCATATCCTGAACGATCTTCTGAATGCGCGGCTC
GTCCTCCACCTTCATGAAGGGCACATGGTTCATCAGATAGTTGATGCAAC
CCTTGCCGCCCAGATACGCCTTTTTCAGATCGGTGCGCTCCAGCTCCGAT
TCCACATACTCCTTTTCATAGTTGTTGATATCCTCCTCGGTGATGGGCTT
GAAGATTTTGCTCCACAACTCCAGCCACGACGACAGCTTGGACTCGCTCT
CATCGTCGTCGTCGATCACGCCCTGCTCGTCGTACAGCGCCCGCTTCTGC
GTGTCCGTAAGCACCTGGTAGAGCTTCGATAGCACCTTGAACTTCTCGGT
GGACTCCGCCTTCTGCTCCTCCGGCACTCGATCGGGATGAACGAGCAGCG
AGAGCTTGTGGTATGCCTTCTTCACCTCCTTCTCGCCG

MXO02168.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-PA 900 CG6693-RA 78..897 838..19 4075 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-RB 1250 CG6693-RB 191..1010 838..19 4085 99.9 Minus
CG6693-RA 1372 CG6693-RA 313..1132 838..19 4085 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11220508..11221327 19..838 4085 99.9 Plus
Blast to na_te.dros performed 2014-11-28 19:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 2061..2096 606..641 108 77.8 Plus

MXO02168.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:54 Download gff for MXO02168.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-PA 78..900 18..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:09 Download gff for MXO02168.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 313..1132 19..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:28 Download gff for MXO02168.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 313..1132 19..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:28 Download gff for MXO02168.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11220508..11221327 19..838 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:09 Download gff for MXO02168.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7046230..7047049 19..838 99   Plus

MXO02168.5prime Sequence

845 bp (707 high quality bases) assembled on 2007-01-19

> MXO02168.5prime
CAGTCGACATGTCGACGCTGGAGCTGTGCGAAAAGTATTTTGGGACGCGC
GATGTGTACAAGCTAATGGAGCTGGCCCGGGGCGCCGGCGAGAAGGAGGT
GAAGAAGGCATACCACAAGCTCTCGCTGCTCGTTCATCCCGATCGAGTGC
CGGAGGAGCAGAAGGCGGAGTCCACCGAGAAGTTCAAGGTGCTATCGAAG
CTCTACCAGGTGCTTACCGACACGCAGAAGCGGGCGCTGTACGACGAGCA
GGGCGTGATCGACGACGACGATGAGAGCGAGTCCAAGCTGTCGTCGTGGC
TGGAGTTGTGGAGCAAAATCTTCAAGCCCATCACCGAGGAGGATATCAAC
AACTATGAAAAGGAGTATGTGGAATCGGAGCTGGAGCGCACCGATCTGAA
AAAGGCGTATCTGGGCGGCAAGGGTTGCATCAACTATCTGATGAACCATG
TGCCCTTCATGAAGGTGGAGGACGAGCCGCGCATTCAGAAGATCGTTCAG
GATATGATTGCCAGCGGCGAGGTGCCCGAGTACAAGATCTTTACCGAGGA
GCCGGCAGCCAAGCGCAAGAAGCGCCACCAGAAGTACGCGCGCGAATTCA
AGGAGGCCAAGGTGATCAAGGAGCGTTTGAAGCGCCGCCAGAAGGAGAAG
GACGACCAGGATTTAGCCGACAACGGTGGCGATTTGCAGCAAATGATCCT
GGCACGTCGCAATCAGCGCGAGTCAAACTTTGGCTCCCTAATGGACCGCC
TGATGGAGAAGTACGGCAACGAGGACGACTCCGACACTGTTGACTTCAGC
GCCTTCGAGAAGAAAAAAAGAAGTCCAAGAAGCCCGCCGCCAAGC

MXO02168.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-PA 900 CG6693-RA 1..838 9..845 4150 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-RB 1250 CG6693-RB 114..951 9..845 4165 99.9 Plus
CG6693-RA 1372 CG6693-RA 236..1073 9..845 4165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11220567..11221404 845..9 4140 99.9 Minus
Blast to na_te.dros performed 2014-11-28 19:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 2061..2096 318..283 108 77.8 Minus

MXO02168.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:54 Download gff for MXO02168.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-PA 1..838 9..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:46 Download gff for MXO02168.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 231..1073 1..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:16 Download gff for MXO02168.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 231..1073 1..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:16 Download gff for MXO02168.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11220567..11221408 1..845 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:46 Download gff for MXO02168.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7046289..7047130 1..845 99   Minus