Clone MXO02172 Report

Search the DGRC for MXO02172

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:72
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG8239-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02172.3prime Sequence

779 bp (706 high quality bases) assembled on 2007-01-19

> MXO02172.3prime
ATGGTCTAGAAAGCTTGCCTTCAGCGGAAGTCCATTTATCAATAAACTAT
TATCAGCGCTTAATTCTTTTGGTCCTTCACCGACTTTCGTGTGGATTATA
TATCTGAAAGCATTTTTAGCATGAACATCTAGTGAATCCAACTTGCTGCT
CTCAGCATCTTGCACTTTTGGAATGGGAAGGCCTCGCAAGTAGGTGCCAC
CATCCGCTAAATCATTGGGGAACACCTTTTGGATAGCGCTCAAGAGATGC
GGAACGTGCTCCGCCAGGACATAGAGGCATGCATTTGGACCAGCATCGAA
GGTGTACGCGGCATGATAGCTACCCATTCGTTCGTTATAATCGTGAACGA
AGGACACGATACTGTGCGACACATCGTTCATGTAGACACACGGCGGATAG
GTGTCCAGGGCGATGGCATGGAACTGATTCGAGTCCTTCATCGTTATCTC
GGCGAATGCCTGAAAGTCATGGCTTGCGATGGCCTCCCTCAATCGGATAA
TCCGGTCGGGAACCACTTGATCCACGCGATGTTTGATCAACTGAGACGTC
TTCACCGCCTGTTGCATGCCCCTTGTCGAGGCAGTCTTCTTGCGTGCATC
GTTAACGACCAGGATGAGCACATGCATGTTGGGCCAGTGGTCGGATGGAG
CTATTTGCCTCGCCACCGAATCGCTGCCATCATCCAGAGCTCCGCGATGC
CACTGCACAAAACCGCCATACAGACTGCGACATGCCGATCCACTTCCTTG
CCGCGCCACCGTCGTCAGCTCCTCATTCA

MXO02172.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-PA 1167 CG8239-RA 404..1164 779..19 3805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 2055 CG8239-RB 490..1250 779..19 3805 100 Minus
CG8239-RA 1538 CG8239-RA 490..1250 779..19 3805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15750172..15750932 779..19 3805 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:04:14 has no hits.

MXO02172.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:56 Download gff for MXO02172.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 405..1167 16..778 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:23 Download gff for MXO02172.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 491..1250 19..778 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:23 Download gff for MXO02172.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 491..1250 19..778 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:23 Download gff for MXO02172.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15750173..15750932 19..778 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:23 Download gff for MXO02172.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15644206..15644965 19..778 100   Minus

MXO02172.5prime Sequence

878 bp (670 high quality bases) assembled on 2007-01-19

> MXO02172.5prime
CAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACATAGCGCTC
ATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCCGTCAATGA
TTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAAGACAACAG
TGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGAATGGGGAG
GAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTGAATGAAGT
TCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCCAACCTGGA
AGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCGGACTGGCA
TCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCCCGACTCTA
CGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCAAGGAAGTG
GATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGCATCGCGGA
GCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCTCCATCCGA
CCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGATGCACGCA
AGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGACGTCTCAG
TTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATTATCCGATT
GAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGAGATAACGA
TGAAGGACTCGCATCAGTTCCATGCCATCGCCCTGGACACCTATCCGCCG
TGTGTCTACATGAACGATGTGTCGCACAGTATCGTGTCCTTCGGTCACGA
TTATAACGAACGAATGGGCAGCTATCAT

MXO02172.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-PA 1167 CG8239-RA 1..870 9..878 4275 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8239-RB 2055 CG8239-RB 85..956 7..878 4315 99.7 Plus
CG8239-RA 1538 CG8239-RA 85..956 7..878 4315 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15750008..15750638 248..878 3110 99.5 Plus
X 23542271 X 15749830..15749949 130..249 600 100 Plus
X 23542271 X 15749365..15749435 61..131 355 100 Plus
X 23542271 X 15749250..15749304 7..61 275 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:32:20 has no hits.

MXO02172.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:56 Download gff for MXO02172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-PA 1..870 9..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:20 Download gff for MXO02172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 82..956 1..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:42 Download gff for MXO02172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8239-RA 82..956 1..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:42 Download gff for MXO02172.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15749247..15749303 1..60 93 -> Plus
X 15749365..15749435 61..131 100 -> Plus
X 15749832..15749949 132..249 100 -> Plus
X 15750010..15750638 250..878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:20 Download gff for MXO02172.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15643280..15643336 1..60 93 -> Plus
arm_X 15643398..15643468 61..131 100 -> Plus
arm_X 15643865..15643982 132..249 100 -> Plus
arm_X 15644043..15644671 250..878 99   Plus