MXO02172.3prime Sequence
779 bp (706 high quality bases) assembled on 2007-01-19
> MXO02172.3prime
ATGGTCTAGAAAGCTTGCCTTCAGCGGAAGTCCATTTATCAATAAACTAT
TATCAGCGCTTAATTCTTTTGGTCCTTCACCGACTTTCGTGTGGATTATA
TATCTGAAAGCATTTTTAGCATGAACATCTAGTGAATCCAACTTGCTGCT
CTCAGCATCTTGCACTTTTGGAATGGGAAGGCCTCGCAAGTAGGTGCCAC
CATCCGCTAAATCATTGGGGAACACCTTTTGGATAGCGCTCAAGAGATGC
GGAACGTGCTCCGCCAGGACATAGAGGCATGCATTTGGACCAGCATCGAA
GGTGTACGCGGCATGATAGCTACCCATTCGTTCGTTATAATCGTGAACGA
AGGACACGATACTGTGCGACACATCGTTCATGTAGACACACGGCGGATAG
GTGTCCAGGGCGATGGCATGGAACTGATTCGAGTCCTTCATCGTTATCTC
GGCGAATGCCTGAAAGTCATGGCTTGCGATGGCCTCCCTCAATCGGATAA
TCCGGTCGGGAACCACTTGATCCACGCGATGTTTGATCAACTGAGACGTC
TTCACCGCCTGTTGCATGCCCCTTGTCGAGGCAGTCTTCTTGCGTGCATC
GTTAACGACCAGGATGAGCACATGCATGTTGGGCCAGTGGTCGGATGGAG
CTATTTGCCTCGCCACCGAATCGCTGCCATCATCCAGAGCTCCGCGATGC
CACTGCACAAAACCGCCATACAGACTGCGACATGCCGATCCACTTCCTTG
CCGCGCCACCGTCGTCAGCTCCTCATTCA
MXO02172.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-PA | 1167 | CG8239-RA | 404..1164 | 779..19 | 3805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 2055 | CG8239-RB | 490..1250 | 779..19 | 3805 | 100 | Minus |
CG8239-RA | 1538 | CG8239-RA | 490..1250 | 779..19 | 3805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15750172..15750932 | 779..19 | 3805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:14 has no hits.
MXO02172.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:56 Download gff for
MXO02172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 405..1167 | 16..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:23 Download gff for
MXO02172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 491..1250 | 19..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:23 Download gff for
MXO02172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 491..1250 | 19..778 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:23 Download gff for
MXO02172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15750173..15750932 | 19..778 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:23 Download gff for
MXO02172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15644206..15644965 | 19..778 | 100 | | Minus |
MXO02172.5prime Sequence
878 bp (670 high quality bases) assembled on 2007-01-19
> MXO02172.5prime
CAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACATAGCGCTC
ATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCCGTCAATGA
TTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAAGACAACAG
TGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGAATGGGGAG
GAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTGAATGAAGT
TCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCCAACCTGGA
AGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCGGACTGGCA
TCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCCCGACTCTA
CGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCAAGGAAGTG
GATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGCATCGCGGA
GCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCTCCATCCGA
CCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGATGCACGCA
AGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGACGTCTCAG
TTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATTATCCGATT
GAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGAGATAACGA
TGAAGGACTCGCATCAGTTCCATGCCATCGCCCTGGACACCTATCCGCCG
TGTGTCTACATGAACGATGTGTCGCACAGTATCGTGTCCTTCGGTCACGA
TTATAACGAACGAATGGGCAGCTATCAT
MXO02172.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-PA | 1167 | CG8239-RA | 1..870 | 9..878 | 4275 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8239-RB | 2055 | CG8239-RB | 85..956 | 7..878 | 4315 | 99.7 | Plus |
CG8239-RA | 1538 | CG8239-RA | 85..956 | 7..878 | 4315 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15750008..15750638 | 248..878 | 3110 | 99.5 | Plus |
X | 23542271 | X | 15749830..15749949 | 130..249 | 600 | 100 | Plus |
X | 23542271 | X | 15749365..15749435 | 61..131 | 355 | 100 | Plus |
X | 23542271 | X | 15749250..15749304 | 7..61 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:32:20 has no hits.
MXO02172.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:56 Download gff for
MXO02172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-PA | 1..870 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:20 Download gff for
MXO02172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 82..956 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:42 Download gff for
MXO02172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8239-RA | 82..956 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:42 Download gff for
MXO02172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15749247..15749303 | 1..60 | 93 | -> | Plus |
X | 15749365..15749435 | 61..131 | 100 | -> | Plus |
X | 15749832..15749949 | 132..249 | 100 | -> | Plus |
X | 15750010..15750638 | 250..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:20 Download gff for
MXO02172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15643280..15643336 | 1..60 | 93 | -> | Plus |
arm_X | 15643398..15643468 | 61..131 | 100 | -> | Plus |
arm_X | 15643865..15643982 | 132..249 | 100 | -> | Plus |
arm_X | 15644043..15644671 | 250..878 | 99 | | Plus |