MXO02173.5prime Sequence
797 bp (690 high quality bases) assembled on 2007-01-19
> MXO02173.5prime
CAGTCGACATGTTGGACGTGATCCAACCCAGCAGCAACCTCCCGACCAGC
GAAAGCACCGATATTGTGGTGGTCCGAGCCAGACCAAAGAAGGTGTTCAA
GCCAAAGGCGCGCATCAATCGGATTCCCCAGGAGCTGCTCGATGATCCAC
TGCTGCAGCAGGCCATCGACCGTCTGCCCTCGAACTACAACTTCGAGATG
CACAAGACGATTTGGCGCATACGGGAGATGAAGGCCAAGCGTGTGGCCCT
GCAACTGCCGGAGGGCCTGCTGATGTACGCCATGGTTATCAGCGACATTG
TGGAGCGATTCACCAGCGCAGATACTGTGATAATGGGCGATGTGACTTAC
GGAGCTTGCTGCGTGGACGACTACACTGCCAAGGCGTTGGGAGCTGATCT
GCTGGTCCACTACGGCCACAGCTGCCTCATTCCCGTAGATCAGACGTGTG
GCATCAAGGTGCTGTACATTTTTGTAGACATCAAAATCGATCCGCTGCAC
TTCCTGGACTCTGTAAAGCTGAACTTCCGCCCGGAAGTGGGCCAAATAGC
TTTAGTAAGCACAATACAGTTCGTGACAACGCTGCAAGCTGCATCTACTG
AGCTAAAGGCAGCCGGCTATGATGTGATAGTACCACAGGCCAAGCCACTT
AGTCCTGGAGAGATTCTTGGGTGCACTTCGCCTCAGCTGCCAGAGACAAC
GAAGATGATAATATATTTGGGTGACGGGCGTTTTCATCTAGAATCCGCAA
TGATAGCAAACCCGTTGCTAAAGGCTTACAAGTACGATCCCTATGAA
MXO02173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11652-PA | 1365 | CG11652-RA | 1..789 | 9..797 | 3945 | 100 | Plus |
| CG11652-PB | 1365 | CG11652-RB | 1..789 | 9..797 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11652-RC | 1720 | CG11652-RC | 88..877 | 8..797 | 3950 | 100 | Plus |
| CG11652-RB | 1784 | CG11652-RB | 152..941 | 8..797 | 3950 | 100 | Plus |
| CG11652-RA | 1725 | CG11652-RA | 93..882 | 8..797 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11694809..11695575 | 774..8 | 3835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:55 has no hits.
MXO02173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:57 Download gff for
MXO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11652-PB | 1..787 | 9..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:13 Download gff for
MXO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11652-RA | 86..882 | 1..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:49 Download gff for
MXO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11652-RA | 86..882 | 1..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:49 Download gff for
MXO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11694722..11694745 | 774..797 | 100 | <- | Minus |
| 3L | 11694810..11695581 | 1..773 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:13 Download gff for
MXO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11687822..11687845 | 774..797 | 100 | <- | Minus |
| arm_3L | 11687910..11688681 | 1..773 | 99 | | Minus |
