Clone MXO02179 Report

Search the DGRC for MXO02179

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:79
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG6321-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02179.3prime Sequence

805 bp (635 high quality bases) assembled on 2007-01-19

> MXO02179.3prime
ATGGTCTAGAAAGCTTGCTTGCTCGGCTATGTAATCCTTAAGTGCGTTGC
AAAGTCTTCTAGCACCATCCACCAACTTCGACTTCGGATAGAAGGCGATG
GACAGGCGGAAGAACTGTTTGCCACTTTGACCATCCGCAGAGAAGCGTGT
TCCTACTATAAAGTAGATCTTGTGATTCTCCATGCAGTACTTGAGAAACT
CCCGGCAGTCCAATCGATCCGGTATCCGCACCCAAATGAAGTATCCGCCC
GTGGGGCTGACCAACTTGCAGCAGTCGGGCAACTCATCTCGAAGCACTTG
CGTGGTGGCCAGCATGCGCTCCTTATAAGCTTCATAGGACTCAGAAATTT
GCTTCTGGGCTAGCTTAAGCTCAAATAGACTGCCCACAATCCCTGATGTG
TAGTTGTTGAAGCATCCACCACTAGTGGCAAAACCACTTCCATCTAAAAT
TGGTTTCAGGCGCGGAGGAACCTCAAGCCAACCCAGGCGAACTCCCGGTC
CCAGAATCTTGGAGAAACTTCCATTGGAGATAACATGTCCTGCGAAGTTG
GCATCATTTCTGTCATCATAGGACAACAGACGGCTGTGTGTGGGCGTTTC
GCCATAGTTGAGAATATTATAAACATCATCGCAGACGACAAGGAAATCAT
AATTCCTAGCAAGTTGCACAATTCCACGACAGACCTCCGGCGAGAATAGA
ATCCCCGTGGGATTATGATACGTTGGTATCGTATAGTAGATTCCCCAGAA
CTTTTTCTTCTTCGATTGAAATCGTCGTTTTGATACCTTCTCTTCAAGAT
CCTTC

MXO02179.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-PA 1257 CG6321-RA 468..1254 805..19 3910 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1594 CG6321-RA 563..1349 805..19 3920 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11059682..11060350 19..687 3345 100 Plus
3L 28110227 3L 11060420..11060538 687..805 580 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 22:28:29 has no hits.

MXO02179.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:58 Download gff for MXO02179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 468..1257 18..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:14 Download gff for MXO02179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 563..1355 11..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:08 Download gff for MXO02179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 563..1355 11..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:08 Download gff for MXO02179.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11059676..11060349 11..686 99 <- Plus
3L 11060420..11060538 687..805 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:14 Download gff for MXO02179.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11052776..11053449 11..686 99 <- Plus
arm_3L 11053520..11053638 687..805 99   Plus

MXO02179.5prime Sequence

857 bp (757 high quality bases) assembled on 2007-01-19

> MXO02179.5prime
CAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGCACCTTTTC
GATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAATCTCGGAGT
GGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAGCTTCCGGA
CGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACCAGTCGCTA
ATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGACGCGAGAT
CTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTGTGAGGATT
TGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTTTGTCCACA
ATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACCTATATGAT
TGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGTTCCCGTAA
AGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGAAGGTATCA
AAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATCTACTATAC
GATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCCGGAGGTCT
GTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTGTCGTCTGC
GATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACACACAGCCG
TCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGGACATGTTA
TCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTCGCCTGGGT
TGGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAGATGGAAGTGGTTT
TGCCACT

MXO02179.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-PA 1257 CG6321-RA 1..849 9..857 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1594 CG6321-RA 94..944 7..857 4255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11060420..11060722 594..292 1515 100 Minus
3L 28110227 3L 11060087..11060350 857..594 1320 100 Minus
3L 28110227 3L 11060967..11061131 171..7 825 100 Minus
3L 28110227 3L 11060786..11060908 292..170 615 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:23:07 has no hits.

MXO02179.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:59 Download gff for MXO02179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 1..849 9..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:11 Download gff for MXO02179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 88..944 1..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:32 Download gff for MXO02179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 88..944 1..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:32 Download gff for MXO02179.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11060087..11060349 595..857 100 <- Minus
3L 11060420..11060721 293..594 100 <- Minus
3L 11060786..11060907 171..292 100 <- Minus
3L 11060968..11061137 1..170 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:11 Download gff for MXO02179.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11053886..11054007 171..292 100 <- Minus
arm_3L 11054068..11054237 1..170 97   Minus
arm_3L 11053520..11053821 293..594 100 <- Minus
arm_3L 11053187..11053449 595..857 100 <- Minus