MXO02180.3prime Sequence
726 bp (659 high quality bases) assembled on 2007-01-19
> MXO02180.3prime
ATGGTCTAGAAAGCTTGCCAACACGAACCTGGGATTAAGCTGCTGATATG
GCGTCAGATCTTTGGTGATCGAGAATAGCGCCCCGTCGCGCACCATCTTG
CACATGAGTGCGCCCAGATTCTTGGCATCGTCGATCCCCGAGTGGGCCTT
GCCCTCGAATGCCAGACCCACGTGCGACAGGGCATCCGTGAAGTTGCACG
GACGGTACTTGTACCACGACCGATAAATGGCCCGCACGTCGATCCACTGA
TTAAAGTAGGCCGGCTTGCGTATCCCTTTGCGGCTGCACTCCTTCGCCAA
GCAGATGCCGAAGTCCCAGTCCGTCCAGGTGACGAATGCACAGTTGCCCA
GTATGTTTGACTTGTTCATCTTGGGCAAGGTAAGGTTGCGGGCTCGCATC
TCATTGCGCAGCCATTCGTTAAACATCACGATCGCCGTCCGCAGCGGCAT
TCCGCTGTCCACAGTCTTCTGCTGGATGCCCGTCAGCTCCGTGCAGTAGG
CGCTCAAGCGCGGCGACTCGAAGGGAAGGATGTACTGGTGGAATTCCGCC
TCGATCTTTCCTGTCTTAAGGTTAACAAGCACTGCTGGGAATTCAATTAT
CTCCGCTTCTCGCCACTCTGGCGGAGCCTGCTTTTCCCAGCAGGTTGCCT
CAAAGTCCACGGTAATCACATATGAGTAGGGTTGCATGGCTAGACGCTTG
GACTTCCTTGACTTCTTGCTTTTGGC
MXO02180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6393-PA | 846 | CG6393-RA | 136..843 | 726..19 | 3515 | 99.8 | Minus |
CG6393-PD | 672 | CG6393-RD | 1..669 | 687..19 | 3320 | 99.8 | Minus |
CG6393-PC | 672 | CG6393-RC | 1..669 | 687..19 | 3320 | 99.8 | Minus |
CG6393-PB | 672 | CG6393-RB | 1..669 | 687..19 | 3320 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RG | 1667 | CG44248-RG | 513..1220 | 726..19 | 3525 | 99.9 | Minus |
Snp-RF | 1419 | CG44248-RF | 265..972 | 726..19 | 3525 | 99.9 | Minus |
Snp-RE | 1578 | CG44248-RE | 424..1131 | 726..19 | 3525 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22068735..22069310 | 594..19 | 2880 | 100 | Minus |
2R | 25286936 | 2R | 22068539..22068671 | 726..594 | 650 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:06 has no hits.
MXO02180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:59 Download gff for
MXO02180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 136..846 | 16..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:44 Download gff for
MXO02180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RE | 424..1137 | 11..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:02 Download gff for
MXO02180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RE | 424..1137 | 11..726 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:02 Download gff for
MXO02180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22068539..22068671 | 594..726 | 99 | -> | Minus |
2R | 22068736..22069316 | 11..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:44 Download gff for
MXO02180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17956044..17956176 | 594..726 | 99 | -> | Minus |
arm_2R | 17956241..17956821 | 11..593 | 99 | | Minus |
MXO02180.5prime Sequence
716 bp (715 high quality bases) assembled on 2007-01-19
> MXO02180.5prime
CAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCCTGATCGAT
ACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGATCCCGAGGA
GTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCCCGCCAAAA
GCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCTACTCATAT
GTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAGGCTCCGCC
AGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCTTGTTAACC
TTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCCTTCCCTTC
GAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGCATCCAGCA
GAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGTGATGTTTA
ACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCTTGCCCAAG
ATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACCTGGACGGA
CTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAAAGGGATAC
GCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCATTTATCGG
TCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTGTCGCACGT
GGGTCTGGCATTCGAG
MXO02180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6393-PA | 846 | CG6393-RA | 1..708 | 9..716 | 3540 | 100 | Plus |
CG6393-PD | 672 | CG6393-RD | 1..534 | 183..716 | 2670 | 100 | Plus |
CG6393-PC | 672 | CG6393-RC | 1..534 | 183..716 | 2670 | 100 | Plus |
CG6393-PB | 672 | CG6393-RB | 1..534 | 183..716 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RD | 1899 | CG44248-RD | 610..1317 | 9..716 | 3540 | 100 | Plus |
Snp-RF | 1419 | CG44248-RF | 151..837 | 30..716 | 3435 | 100 | Plus |
Snp-RG | 1667 | CG44248-RG | 401..1085 | 32..716 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22068735..22069175 | 276..716 | 2205 | 100 | Plus |
2R | 25286936 | 2R | 22068425..22068671 | 30..276 | 1235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:40 has no hits.
MXO02180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:00 Download gff for
MXO02180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 1..708 | 9..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:55 Download gff for
MXO02180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1317 | 1..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:32 Download gff for
MXO02180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1317 | 1..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:32 Download gff for
MXO02180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22068427..22068671 | 32..276 | 100 | -> | Plus |
2R | 22068736..22069175 | 277..716 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:55 Download gff for
MXO02180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17955932..17956176 | 32..276 | 100 | -> | Plus |
arm_2R | 17956241..17956680 | 277..716 | 100 | | Plus |