Clone MXO02180 Report

Search the DGRC for MXO02180

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:80
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptSnp-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02180.3prime Sequence

726 bp (659 high quality bases) assembled on 2007-01-19

> MXO02180.3prime
ATGGTCTAGAAAGCTTGCCAACACGAACCTGGGATTAAGCTGCTGATATG
GCGTCAGATCTTTGGTGATCGAGAATAGCGCCCCGTCGCGCACCATCTTG
CACATGAGTGCGCCCAGATTCTTGGCATCGTCGATCCCCGAGTGGGCCTT
GCCCTCGAATGCCAGACCCACGTGCGACAGGGCATCCGTGAAGTTGCACG
GACGGTACTTGTACCACGACCGATAAATGGCCCGCACGTCGATCCACTGA
TTAAAGTAGGCCGGCTTGCGTATCCCTTTGCGGCTGCACTCCTTCGCCAA
GCAGATGCCGAAGTCCCAGTCCGTCCAGGTGACGAATGCACAGTTGCCCA
GTATGTTTGACTTGTTCATCTTGGGCAAGGTAAGGTTGCGGGCTCGCATC
TCATTGCGCAGCCATTCGTTAAACATCACGATCGCCGTCCGCAGCGGCAT
TCCGCTGTCCACAGTCTTCTGCTGGATGCCCGTCAGCTCCGTGCAGTAGG
CGCTCAAGCGCGGCGACTCGAAGGGAAGGATGTACTGGTGGAATTCCGCC
TCGATCTTTCCTGTCTTAAGGTTAACAAGCACTGCTGGGAATTCAATTAT
CTCCGCTTCTCGCCACTCTGGCGGAGCCTGCTTTTCCCAGCAGGTTGCCT
CAAAGTCCACGGTAATCACATATGAGTAGGGTTGCATGGCTAGACGCTTG
GACTTCCTTGACTTCTTGCTTTTGGC

MXO02180.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6393-PA 846 CG6393-RA 136..843 726..19 3515 99.8 Minus
CG6393-PD 672 CG6393-RD 1..669 687..19 3320 99.8 Minus
CG6393-PC 672 CG6393-RC 1..669 687..19 3320 99.8 Minus
CG6393-PB 672 CG6393-RB 1..669 687..19 3320 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RG 1667 CG44248-RG 513..1220 726..19 3525 99.9 Minus
Snp-RF 1419 CG44248-RF 265..972 726..19 3525 99.9 Minus
Snp-RE 1578 CG44248-RE 424..1131 726..19 3525 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22068735..22069310 594..19 2880 100 Minus
2R 25286936 2R 22068539..22068671 726..594 650 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 22:26:06 has no hits.

MXO02180.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:59 Download gff for MXO02180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 136..846 16..726 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:44 Download gff for MXO02180.3prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RE 424..1137 11..726 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:02 Download gff for MXO02180.3prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RE 424..1137 11..726 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:02 Download gff for MXO02180.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22068539..22068671 594..726 99 -> Minus
2R 22068736..22069316 11..593 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:44 Download gff for MXO02180.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17956044..17956176 594..726 99 -> Minus
arm_2R 17956241..17956821 11..593 99   Minus

MXO02180.5prime Sequence

716 bp (715 high quality bases) assembled on 2007-01-19

> MXO02180.5prime
CAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCCTGATCGAT
ACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGATCCCGAGGA
GTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCCCGCCAAAA
GCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCTACTCATAT
GTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAGGCTCCGCC
AGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCTTGTTAACC
TTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCCTTCCCTTC
GAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGCATCCAGCA
GAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGTGATGTTTA
ACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCTTGCCCAAG
ATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACCTGGACGGA
CTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAAAGGGATAC
GCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCATTTATCGG
TCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTGTCGCACGT
GGGTCTGGCATTCGAG

MXO02180.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6393-PA 846 CG6393-RA 1..708 9..716 3540 100 Plus
CG6393-PD 672 CG6393-RD 1..534 183..716 2670 100 Plus
CG6393-PC 672 CG6393-RC 1..534 183..716 2670 100 Plus
CG6393-PB 672 CG6393-RB 1..534 183..716 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RD 1899 CG44248-RD 610..1317 9..716 3540 100 Plus
Snp-RF 1419 CG44248-RF 151..837 30..716 3435 100 Plus
Snp-RG 1667 CG44248-RG 401..1085 32..716 3425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22068735..22069175 276..716 2205 100 Plus
2R 25286936 2R 22068425..22068671 30..276 1235 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:15:40 has no hits.

MXO02180.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:00 Download gff for MXO02180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 1..708 9..716 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:55 Download gff for MXO02180.5prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1317 1..716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:32 Download gff for MXO02180.5prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1317 1..716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:32 Download gff for MXO02180.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22068427..22068671 32..276 100 -> Plus
2R 22068736..22069175 277..716 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:55 Download gff for MXO02180.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17955932..17956176 32..276 100 -> Plus
arm_2R 17956241..17956680 277..716 100   Plus