Clone MXO02181 Report

Search the DGRC for MXO02181

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:81
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptcold-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02181.5prime Sequence

483 bp (483 high quality bases) assembled on 2007-01-19

> MXO02181.5prime
CAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCGCCGCTGTT
TACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGCTATGTCTG
CTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCATCAAGACCT
GCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGGGATCCCAG
CCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCCAAGAGGTG
CATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATATGCAGCTGT
ACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGTGCTGCAAG
GGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCAAGACAAGG
CTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACTTGGATCTT
GGCTCATTCCACGCTCTGCAAGCTTTCTAGACC

MXO02181.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2813-PA 462 CG2813-RA 1..459 9..467 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 1032 CG2813-RB 73..531 9..467 2295 100 Plus
cold-RA 1093 CG2813-RA 134..592 9..467 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 574778..575090 65..377 1565 100 Plus
2L 23513712 2L 575144..575233 378..467 450 100 Plus
2L 23513712 2L 574641..574698 9..66 290 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:29:58 has no hits.

MXO02181.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:01 Download gff for MXO02181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 9..468 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:56 Download gff for MXO02181.5prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..596 1..473 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:32 Download gff for MXO02181.5prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..596 1..473 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:32 Download gff for MXO02181.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 574631..574698 1..66 94 -> Plus
2L 574780..575090 67..377 100 -> Plus
2L 575144..575237 378..473 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:56 Download gff for MXO02181.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 574631..574698 1..66 94 -> Plus
arm_2L 574780..575090 67..377 100 -> Plus
arm_2L 575144..575237 378..473 96   Plus

MXO02181.3prime Sequence

483 bp (483 high quality bases) assembled on 2007-01-19

> MXO02181.3prime
ATGGTCTAGAAAGCTTGCAGAGCGTGGAATGAGCCAAGATCCAAGTCCTA
ATAGTGCGGTGAGCAGGGTTAAACAGACACCATAGCCTTGTCTTGAAGGA
GCGCCACTAATGACAAAGTAGTTGCACCGATCTCCCTTGCAGCACTCGTT
GCACGCCCAATCCTCGTACCAGATGTGGGTGCAGTACAGCTGCATATAGC
GCTTCCTCTTGGACTGGCACTGCTCCTTGGTCATGCACCTCTTGGACACG
TAGTATTGCTTAAGAGCACCCTCCGAGAAGTACGGCTGGGATCCCCAGCG
GATCTCCGTTCCGCAGACGTTTTCAAAGGGCTCGCAGGTCTTGATGGTGT
TCAGGCACTTCTCCGTGTTGCCCGTCTGGTTGGAGCAGACATAGCACTCC
AGACCGGCCACGAAATTTACTTGCGAACACAAGTAAACAGCGGCGACTAG
CACCACAGCTATCTCCCACGATTTCATGTCGAC

MXO02181.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2813-PA 462 CG2813-RA 1..459 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 1032 CG2813-RB 73..531 477..19 2295 100 Minus
cold-RA 1093 CG2813-RA 134..592 477..19 2295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 574778..575090 421..109 1565 100 Minus
2L 23513712 2L 575144..575233 108..19 450 100 Minus
2L 23513712 2L 574641..574698 477..420 290 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:30:24 has no hits.

MXO02181.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:00 Download gff for MXO02181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:57 Download gff for MXO02181.3prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 126..596 13..483 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:47 Download gff for MXO02181.3prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 126..596 13..483 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:47 Download gff for MXO02181.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 574780..575090 109..419 100 -> Minus
2L 575144..575237 13..108 96   Minus
2L 574633..574698 420..483 93 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:57 Download gff for MXO02181.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 574633..574698 420..483 93 -> Minus
arm_2L 574780..575090 109..419 100 -> Minus
arm_2L 575144..575237 13..108 96   Minus