MXO02181.5prime Sequence
483 bp (483 high quality bases) assembled on 2007-01-19
> MXO02181.5prime
CAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCGCCGCTGTT
TACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGCTATGTCTG
CTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCATCAAGACCT
GCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGGGATCCCAG
CCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCCAAGAGGTG
CATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATATGCAGCTGT
ACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGTGCTGCAAG
GGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCAAGACAAGG
CTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACTTGGATCTT
GGCTCATTCCACGCTCTGCAAGCTTTCTAGACC
MXO02181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2813-PA | 462 | CG2813-RA | 1..459 | 9..467 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 1032 | CG2813-RB | 73..531 | 9..467 | 2295 | 100 | Plus |
cold-RA | 1093 | CG2813-RA | 134..592 | 9..467 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 574778..575090 | 65..377 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 575144..575233 | 378..467 | 450 | 100 | Plus |
2L | 23513712 | 2L | 574641..574698 | 9..66 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:29:58 has no hits.
MXO02181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:01 Download gff for
MXO02181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 9..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:56 Download gff for
MXO02181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..596 | 1..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:32 Download gff for
MXO02181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..596 | 1..473 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:32 Download gff for
MXO02181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 574631..574698 | 1..66 | 94 | -> | Plus |
2L | 574780..575090 | 67..377 | 100 | -> | Plus |
2L | 575144..575237 | 378..473 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:56 Download gff for
MXO02181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 574631..574698 | 1..66 | 94 | -> | Plus |
arm_2L | 574780..575090 | 67..377 | 100 | -> | Plus |
arm_2L | 575144..575237 | 378..473 | 96 | | Plus |
MXO02181.3prime Sequence
483 bp (483 high quality bases) assembled on 2007-01-19
> MXO02181.3prime
ATGGTCTAGAAAGCTTGCAGAGCGTGGAATGAGCCAAGATCCAAGTCCTA
ATAGTGCGGTGAGCAGGGTTAAACAGACACCATAGCCTTGTCTTGAAGGA
GCGCCACTAATGACAAAGTAGTTGCACCGATCTCCCTTGCAGCACTCGTT
GCACGCCCAATCCTCGTACCAGATGTGGGTGCAGTACAGCTGCATATAGC
GCTTCCTCTTGGACTGGCACTGCTCCTTGGTCATGCACCTCTTGGACACG
TAGTATTGCTTAAGAGCACCCTCCGAGAAGTACGGCTGGGATCCCCAGCG
GATCTCCGTTCCGCAGACGTTTTCAAAGGGCTCGCAGGTCTTGATGGTGT
TCAGGCACTTCTCCGTGTTGCCCGTCTGGTTGGAGCAGACATAGCACTCC
AGACCGGCCACGAAATTTACTTGCGAACACAAGTAAACAGCGGCGACTAG
CACCACAGCTATCTCCCACGATTTCATGTCGAC
MXO02181.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2813-PA | 462 | CG2813-RA | 1..459 | 477..19 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 1032 | CG2813-RB | 73..531 | 477..19 | 2295 | 100 | Minus |
cold-RA | 1093 | CG2813-RA | 134..592 | 477..19 | 2295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 574778..575090 | 421..109 | 1565 | 100 | Minus |
2L | 23513712 | 2L | 575144..575233 | 108..19 | 450 | 100 | Minus |
2L | 23513712 | 2L | 574641..574698 | 477..420 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:24 has no hits.
MXO02181.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:00 Download gff for
MXO02181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:57 Download gff for
MXO02181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 126..596 | 13..483 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:47 Download gff for
MXO02181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 126..596 | 13..483 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:47 Download gff for
MXO02181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 574780..575090 | 109..419 | 100 | -> | Minus |
2L | 575144..575237 | 13..108 | 96 | | Minus |
2L | 574633..574698 | 420..483 | 93 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:57 Download gff for
MXO02181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 574633..574698 | 420..483 | 93 | -> | Minus |
arm_2L | 574780..575090 | 109..419 | 100 | -> | Minus |
arm_2L | 575144..575237 | 13..108 | 96 | | Minus |