MXO02182.3prime Sequence
715 bp (689 high quality bases) assembled on 2007-01-19
> MXO02182.3prime
ATGGTCTAGAAAGCTTGCTTGCTGCAGCTCACTCAAGTCTGGAATGTTGC
AAGCGTAATCGTCGTTTGAGGTGGAGCTGGAGTCGTTGGTTAGCTCAAAG
CTGTTATCACCACTGGTGCCAGTAACCGTTGTCAGGCTGGAGTCATTGTT
TGAGCTCTGCTGCTCTGAGTTACTCAGATTTGGCAAGAAGGCATCTGGGT
ACTCTTCCTCTCCATCCTCCTCACCATCGTTATCATCGTCATCATCTTTG
CTCAAGCTGCTGGAGCTGCTTCTGCTCTCAGGACGCAAGGTCTCCCTGCT
GCCTTTACTTATATTCAAGGCGCTTATCATTGGCAAGTTGTTTGAGCTCG
CCGTTGATGTGGTAGCCGTTGAAGCTTTCGCTGGAGCGTGATTTGGTCGA
GAGTTTACATCTCCAGAATTATCAATTAAAAGAGTGATTCGCGGAATGTT
AGGCGGATCCGTTGAGCTAGTTCTGTTGCTTGGGTTGTCCGACACAGTTG
CCCGCAAATCACCAGAGTTCGAAATGAGTATAGACAGATCGGGGATGTTC
ATCGGTCGTGGCTGCAGCACTGGCTCCTGAATTTGTTCGCTGGGATTGAG
AATTGTCAGATTGGGCACATTCGGGATGGTCGTCGACGTAGTTCCGGTGC
CCGTCAATGTTGCAAAGTTGGAGTTAGTAGTACTCCCTTTGCCGTCGTCC
AGGTGGCGCTATGGG
MXO02182.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10520-PA | 1389 | tub-RA | 691..1386 | 715..19 | 3370 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 2006 | CG10520-RC | 879..1574 | 715..19 | 3415 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4388686..4389381 | 715..19 | 3390 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:10 has no hits.
MXO02182.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:01 Download gff for
MXO02182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10520-PA | 691..1389 | 18..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:46 Download gff for
MXO02182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 879..1574 | 19..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:04 Download gff for
MXO02182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 879..1574 | 19..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:04 Download gff for
MXO02182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4388686..4389384 | 13..715 | 98 | -- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:46 Download gff for
MXO02182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 214408..215106 | 13..715 | 98 | -- | Minus |
MXO02182.5prime Sequence
805 bp (715 high quality bases) assembled on 2007-01-19
> MXO02182.5prime
CAGTCGACATGGCGTATGGCTGGAACGGATGCGGAATGGGCGTGCAGGTG
AACGGAAGCAACGGCGCCATAGGTTTATCCTCGAAGTATTCTCGCAACAC
GGAGCTGCGACGCGTTGAGGACAATGACATTTACCGGCTTGCCAAAATAC
TAGATGAGAACTCATGCTGGCGCAAATTGATGTCGATCATACCCAAGGGC
ATGGATGTGCAGGCCTGCAGCGGAGCCGGATGCTTGAATTTTCCGGCGGA
AATCAAAAAGGGATTTAAGTACACTGCGCAGGACGTGTTCCAGATTGACG
AGGCTGCAAACCGACTACCGCCGGACCAAAGCAAGTCGCAGATGATGATC
GACGAGTGGAAGACCTCTGGCAAGCTCAACGAGCGGCCCACGGTTGGGGT
ATTGCTCCAACTTCTGGTGCAGGCAGAGCTCTTCAGTGCGGCAGACTTTG
TGGCACTAGACTTCCTAAATGAGTCCACCCCTGCCCGGCCTGTTGACGGT
CCCGGTGCGCTCATAAGCCTTGAGCTGCTGGAAGAGGAAATGGAAGTGGA
CAACGAGGGGCTGAGCCTCAAATACCAGTCAAGCACTGCCACTCTTGGGG
CAGACGCTCAAGGTAGCGTTGGCCTGAACCTGGACAACTTTGAAAAAGAC
ATTGTGAGGCGGGACAAGAGTGTGCCCCAGCCGTCAGGAAACACCCCTCC
CATAGCGCCACCTCGACGACAGCAAAGGAGTACTACTAACTCCAACTTTG
CAACATTGACAGGCACCGGAACTACGTCGACGACCATCCCGAATGTGCCC
AATCT
MXO02182.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10520-PA | 1389 | tub-RA | 1..797 | 9..805 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 2006 | CG10520-RC | 188..985 | 8..805 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4387929..4388392 | 8..471 | 2320 | 100 | Plus |
| 3R | 32079331 | 3R | 4388458..4388792 | 471..805 | 1675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:27 has no hits.
MXO02182.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:01 Download gff for
MXO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10520-PA | 1..797 | 9..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:32 Download gff for
MXO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 185..985 | 1..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:47 Download gff for
MXO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 185..985 | 1..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:47 Download gff for
MXO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4387926..4388396 | 1..473 | 98 | -> | Plus |
| 3R | 4388461..4388792 | 474..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:32 Download gff for
MXO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 213648..214118 | 1..473 | 98 | -> | Plus |
| arm_3R | 214183..214514 | 474..805 | 100 | | Plus |
