MXO02183.3prime Sequence
842 bp (725 high quality bases) assembled on 2007-01-19
> MXO02183.3prime
ATGGTCTAGAAAGCTTGCATCCTTTTCGCCCTCGCGGCGTTTCTCGAAAA
GGGCCAGGAAGATGCCATCGGTAAGATCACTGTCCGGCTGGCAATACAGG
ACGTTCTTGCCAATATTGGGATAGTCCTTGTCGCCCACATTGTGCCACTT
GTTGCGCAAGGCCTTCTTGCAGCTGAGCAGCTTGAAGGATGGATTTAGCT
GAAGACAACGCTGCACCACCTGCTCGTTTTCCTCCTTCCACAGCGAACAC
GTGCAGTAGGCAATGCGTTTGACGTTCGGAAAGGCGCCCATCGCGTGCGA
CAGGATCTTAATTTGCAAACCCTGCAGCTTTTGCAGCCGCTTGTCCTCCT
TCGGCTCGTCGCACACGGTCATGCGGTTTTGCATTCCGCTGCCAGAGCAA
CTAGGGTCCACCAGGATGTACTCTACGTCCGGAAAGCGTTCGGGTGTTAG
GTTCAAGGCGTCTCCCAAAATGGGTTTTACAATATCGCAACCAGCATCCT
TTGTTATTTCGCACAGCGTATTGTAGCGTACGTGGTCCTGCTCCACGGAG
TAGATGCATCCCTTGTTCTGCATCACATTGCATATGTGCACTGTCTTCAT
ACCGGGAGCTGCGCACATATCCAGCACAGTGGCCCCAGACGGCGGAGCAA
GTAGTTCGGCGGCCAAACAGGTGGCCTTGTTCTGCAGTATAAACCTCTTG
CTGTGCACCAACGGATGGCGGACCCAGTAGTTGGACCACTTGGCAGGAAA
AATGAGCACACCCTCAACGTGCAGATCGGTCATGAACTCGTTCTCCGCCA
GCGATTTGATGGCAGTCAGAAAATCCGCATAGCTGGCGTCCG
MXO02183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5558-PA | 1302 | CG5558-RA | 476..1299 | 842..19 | 4120 | 100 | Minus |
CG5558-PB | 1281 | CG5558-RB | 455..1278 | 842..19 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1498 | CG42358-RA | 538..1361 | 842..19 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19160236..19160663 | 19..446 | 2140 | 100 | Plus |
3R | 32079331 | 3R | 19160727..19161122 | 447..842 | 1980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:06 has no hits.
MXO02183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:02 Download gff for
MXO02183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PB | 455..1281 | 18..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:56 Download gff for
MXO02183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 538..1366 | 11..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:25 Download gff for
MXO02183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 538..1366 | 11..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:25 Download gff for
MXO02183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19160231..19160663 | 11..446 | 99 | <- | Plus |
3R | 19160727..19161122 | 447..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:56 Download gff for
MXO02183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14985953..14986385 | 11..446 | 99 | <- | Plus |
arm_3R | 14986449..14986844 | 447..842 | 100 | | Plus |
MXO02183.5prime Sequence
756 bp (726 high quality bases) assembled on 2007-01-19
> MXO02183.5prime
CAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCACCCAATAC
AGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAGAAGTGCAT
CAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTCTTTGCATA
CGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAAAGGCCATC
GAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCCAGTTTGGC
CAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCTGAACGGCG
AAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGACTGCTAAAT
TCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCTCGATATGT
GCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGACTACCTGC
ATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCAGCTATGCG
GATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTCATGACCGA
TCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTCCAACTACT
GGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGCAGAACAAG
GCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGGGCCACTGT
GCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACATATGCAATG
TGATGC
MXO02183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5558-PA | 1302 | CG5558-RA | 1..748 | 9..756 | 3740 | 100 | Plus |
CG5558-PB | 1281 | CG5558-RB | 396..727 | 425..756 | 1660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1498 | CG42358-RA | 63..810 | 9..756 | 3740 | 100 | Plus |
CG42359-RA | 966 | CG5558-RB | 63..435 | 9..381 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19160850..19161226 | 756..380 | 1885 | 100 | Minus |
3R | 32079331 | 3R | 19161790..19162039 | 381..132 | 1250 | 100 | Minus |
3R | 32079331 | 3R | 19162116..19162238 | 131..9 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:28 has no hits.
MXO02183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:02 Download gff for
MXO02183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PA | 1..748 | 9..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:27 Download gff for
MXO02183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 51..810 | 1..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:31 Download gff for
MXO02183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 51..810 | 1..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:31 Download gff for
MXO02183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19160850..19161224 | 382..756 | 100 | <- | Minus |
3R | 19161790..19162039 | 132..381 | 100 | <- | Minus |
3R | 19162116..19162243 | 1..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:27 Download gff for
MXO02183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14987838..14987965 | 1..131 | 96 | | Minus |
arm_3R | 14986572..14986946 | 382..756 | 100 | <- | Minus |
arm_3R | 14987512..14987761 | 132..381 | 100 | <- | Minus |