Clone MXO02183 Report

Search the DGRC for MXO02183

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:83
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG42358-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02183.3prime Sequence

842 bp (725 high quality bases) assembled on 2007-01-19

> MXO02183.3prime
ATGGTCTAGAAAGCTTGCATCCTTTTCGCCCTCGCGGCGTTTCTCGAAAA
GGGCCAGGAAGATGCCATCGGTAAGATCACTGTCCGGCTGGCAATACAGG
ACGTTCTTGCCAATATTGGGATAGTCCTTGTCGCCCACATTGTGCCACTT
GTTGCGCAAGGCCTTCTTGCAGCTGAGCAGCTTGAAGGATGGATTTAGCT
GAAGACAACGCTGCACCACCTGCTCGTTTTCCTCCTTCCACAGCGAACAC
GTGCAGTAGGCAATGCGTTTGACGTTCGGAAAGGCGCCCATCGCGTGCGA
CAGGATCTTAATTTGCAAACCCTGCAGCTTTTGCAGCCGCTTGTCCTCCT
TCGGCTCGTCGCACACGGTCATGCGGTTTTGCATTCCGCTGCCAGAGCAA
CTAGGGTCCACCAGGATGTACTCTACGTCCGGAAAGCGTTCGGGTGTTAG
GTTCAAGGCGTCTCCCAAAATGGGTTTTACAATATCGCAACCAGCATCCT
TTGTTATTTCGCACAGCGTATTGTAGCGTACGTGGTCCTGCTCCACGGAG
TAGATGCATCCCTTGTTCTGCATCACATTGCATATGTGCACTGTCTTCAT
ACCGGGAGCTGCGCACATATCCAGCACAGTGGCCCCAGACGGCGGAGCAA
GTAGTTCGGCGGCCAAACAGGTGGCCTTGTTCTGCAGTATAAACCTCTTG
CTGTGCACCAACGGATGGCGGACCCAGTAGTTGGACCACTTGGCAGGAAA
AATGAGCACACCCTCAACGTGCAGATCGGTCATGAACTCGTTCTCCGCCA
GCGATTTGATGGCAGTCAGAAAATCCGCATAGCTGGCGTCCG

MXO02183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5558-PA 1302 CG5558-RA 476..1299 842..19 4120 100 Minus
CG5558-PB 1281 CG5558-RB 455..1278 842..19 4120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1498 CG42358-RA 538..1361 842..19 4120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19160236..19160663 19..446 2140 100 Plus
3R 32079331 3R 19160727..19161122 447..842 1980 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:52:06 has no hits.

MXO02183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:02 Download gff for MXO02183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PB 455..1281 18..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:56 Download gff for MXO02183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 538..1366 11..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:25 Download gff for MXO02183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 538..1366 11..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:25 Download gff for MXO02183.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19160231..19160663 11..446 99 <- Plus
3R 19160727..19161122 447..842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:56 Download gff for MXO02183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14985953..14986385 11..446 99 <- Plus
arm_3R 14986449..14986844 447..842 100   Plus

MXO02183.5prime Sequence

756 bp (726 high quality bases) assembled on 2007-01-19

> MXO02183.5prime
CAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCACCCAATAC
AGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAGAAGTGCAT
CAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTCTTTGCATA
CGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAAAGGCCATC
GAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCCAGTTTGGC
CAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCTGAACGGCG
AAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGACTGCTAAAT
TCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCTCGATATGT
GCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGACTACCTGC
ATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCAGCTATGCG
GATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTCATGACCGA
TCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTCCAACTACT
GGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGCAGAACAAG
GCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGGGCCACTGT
GCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACATATGCAATG
TGATGC

MXO02183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5558-PA 1302 CG5558-RA 1..748 9..756 3740 100 Plus
CG5558-PB 1281 CG5558-RB 396..727 425..756 1660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1498 CG42358-RA 63..810 9..756 3740 100 Plus
CG42359-RA 966 CG5558-RB 63..435 9..381 1865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19160850..19161226 756..380 1885 100 Minus
3R 32079331 3R 19161790..19162039 381..132 1250 100 Minus
3R 32079331 3R 19162116..19162238 131..9 615 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:04:28 has no hits.

MXO02183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:02 Download gff for MXO02183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PA 1..748 9..756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:27 Download gff for MXO02183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 51..810 1..756 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:31 Download gff for MXO02183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 51..810 1..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:31 Download gff for MXO02183.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19160850..19161224 382..756 100 <- Minus
3R 19161790..19162039 132..381 100 <- Minus
3R 19162116..19162243 1..131 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:27 Download gff for MXO02183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14987838..14987965 1..131 96   Minus
arm_3R 14986572..14986946 382..756 100 <- Minus
arm_3R 14987512..14987761 132..381 100 <- Minus