MXO02184.3prime Sequence
843 bp (662 high quality bases) assembled on 2007-01-19
> MXO02184.3prime
ATGGTCTAGAAAGCTTGCCCTGAGTCGCAACGCTTTTATTTCAGGAAAAC
CATGTTTAGGGGGTCGAGATTTGGCCGCCGCTAAACAGGTCTCTTTGAGC
GACTTACCAACCGGCCGTTTGACGCATTCATCAAAGTAGCACTTCTCAAC
GTTATGCAGAAATTCCACCAGTAGTCGGTCGTCACCGCCATTGGGTCCCA
CGGAGTACTCGCACTCATAGTTGTGCTTCTTGAGATCTCGCACACAGCAG
TCGATGAACTCTGCATTGGCAGAAAACCAGTCGTTGTGACGCTCAAGGGG
AATACCCAAACGAGTCCTTACTACTCCAGTCAACCAGGTGTCATCGATCC
AAAAAAATGACATCCTCTCCGCCTCCGCCACAATCCTCTCGGCTGTTGGC
ACGTTGGTCACGTAAAGCCAGCCCGACAAATAGGCGGGATATAAAGCCTG
AGGATACTCCTTTTTGCTAACGTACCACTTATTGGCTCGAAGGCGAATGG
GGGGCTTGGCATCCAGTACGTAGCCAGATAACAAAGTACTTGATGTGGCC
AGTCCAGGTTCGCGCACCTCGAGGGTCTCTAAATACCTGCGCAGATGAAA
CACATCGTAAATGATGTCATCATCCAGTTTAATGATAAACTTGGCCTGCT
TTTTGCACTCCTCAGAGACCCACTTTAATCCCATTACGTGTTTGTAGCTC
AGATTGCGATAGTCCTCGATGAAATTCCCCTGGAGAAGGTCCCCGAAACG
ATTCTGTTCGCTGGCCAGTTGATCCTGGCTTATAAAATGCTCTCTTGAAG
GCAGGGCTGCCAAGAGAAAAACTCTTCGCAGGCCCATTTCTTC
MXO02184.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-PB | 1077 | CG3038-RB | 250..1074 | 843..19 | 4125 | 100 | Minus |
CG3038-PA | 1167 | CG3038-RA | 340..1164 | 843..19 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-RA | 1731 | CG3038-RA | 526..1350 | 843..19 | 4125 | 100 | Minus |
CG3038-RB | 1630 | CG3038-RB | 425..1249 | 843..19 | 4125 | 100 | Minus |
CG3038-RC | 1751 | CG3038-RC | 696..1263 | 586..19 | 2840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 244442..245266 | 19..843 | 4125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:44 has no hits.
MXO02184.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:03 Download gff for
MXO02184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-PA | 340..1167 | 16..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:42 Download gff for
MXO02184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RB | 425..1249 | 19..843 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:56 Download gff for
MXO02184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RB | 425..1249 | 19..843 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:56 Download gff for
MXO02184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 244442..245266 | 19..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:42 Download gff for
MXO02184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 138475..139299 | 19..843 | 100 | | Plus |
MXO02184.5prime Sequence
899 bp (821 high quality bases) assembled on 2007-01-19
> MXO02184.5prime
CAGTCGACATGCGCATGCGCGGACGAAGATTGCTTCCGATTATTTTGTCG
CTTCTTTTGATCGTCCTACTGAGTCTCTGTTACTTTTCGAATCACTTGAG
GGATTCAAGCCAGTCCCGCAAAAACGGTTTCTTGCTGCACTTACCACTCG
AAACGAAGAGGAATCCATCTAACCCTAATACTCCGTTAAGTAATCTTCTG
AATCTCACGGACTTCCACTACTTGCTGGCCAGTAATGTGTGTCGAAAGGC
AAAAAGAGAACTCTTAGCCGTTTTAATAGTTACTTCGTATGCCGGACACG
ATGCCTTGCGATCAGCTCACCGACAGGCAATTCCCCAAAGCAAACTGGAA
GAAATGGGCCTGCGAAGAGTTTTTCTCTTGGCAGCCCTGCCTTCAAGAGA
GCATTTTATAAGCCAGGATCAACTGGCCAGCGAACAGAATCGTTTCGGGG
ACCTTCTCCAGGGGAATTTCATCGAGGACTATCGCAATCTGAGCTACAAA
CACGTAATGGGATTAAAGTGGGTCTCTGAGGAGTGCAAAAAGCAGGCCAA
GTTTATCATTAAACTGGATGATGACATCATTTACGATGTGTTTCATCTGC
GCAGGTATTTAGAGACCCTCGAGGTGCGCGAACCTGGACTGGCCACATCA
AGTACTTTGTTATCTGGCTACGTACTGGATGCCAAGCCCCCCATTCGCCT
TCGAGCCAATAAGTGGTACGTTAGCAAAAAGGAGTATCCTCAGGCTTTAT
ATCCCGCCTATTTGTCGGGCTGGCTTTACGTGACCAACGTGCCAACAGCC
GAGAGGATTGTGGCGGAGGCGGAGAGGATGTCATTTTTTTGGATCGATGA
CACCTGGTTGACTGGAGTAGTAAAGACTCGTTTGGGTATTCCCCTTGAG
MXO02184.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-PA | 1167 | CG3038-RA | 1..891 | 9..899 | 4430 | 99.8 | Plus |
CG3038-PB | 1077 | CG3038-RB | 3..801 | 101..899 | 3970 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-RA | 1731 | CG3038-RA | 187..1077 | 9..899 | 4440 | 99.9 | Plus |
CG3038-RB | 1630 | CG3038-RB | 178..976 | 101..899 | 3980 | 99.9 | Plus |
CG3038-RC | 1751 | CG3038-RC | 187..697 | 9..519 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 244715..245350 | 899..264 | 3165 | 99.8 | Minus |
X | 23542271 | X | 245412..245670 | 267..9 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:35 has no hits.
MXO02184.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:03 Download gff for
MXO02184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-PA | 1..891 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:30 Download gff for
MXO02184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RA | 181..1077 | 2..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:36 Download gff for
MXO02184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RA | 181..1077 | 2..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:36 Download gff for
MXO02184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 244715..245346 | 268..899 | 99 | <- | Minus |
X | 245412..245676 | 2..267 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:30 Download gff for
MXO02184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 138748..139379 | 268..899 | 99 | <- | Minus |
arm_X | 139445..139709 | 2..267 | 98 | | Minus |