Clone MXO02184 Report

Search the DGRC for MXO02184

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:84
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG3038-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02184.3prime Sequence

843 bp (662 high quality bases) assembled on 2007-01-19

> MXO02184.3prime
ATGGTCTAGAAAGCTTGCCCTGAGTCGCAACGCTTTTATTTCAGGAAAAC
CATGTTTAGGGGGTCGAGATTTGGCCGCCGCTAAACAGGTCTCTTTGAGC
GACTTACCAACCGGCCGTTTGACGCATTCATCAAAGTAGCACTTCTCAAC
GTTATGCAGAAATTCCACCAGTAGTCGGTCGTCACCGCCATTGGGTCCCA
CGGAGTACTCGCACTCATAGTTGTGCTTCTTGAGATCTCGCACACAGCAG
TCGATGAACTCTGCATTGGCAGAAAACCAGTCGTTGTGACGCTCAAGGGG
AATACCCAAACGAGTCCTTACTACTCCAGTCAACCAGGTGTCATCGATCC
AAAAAAATGACATCCTCTCCGCCTCCGCCACAATCCTCTCGGCTGTTGGC
ACGTTGGTCACGTAAAGCCAGCCCGACAAATAGGCGGGATATAAAGCCTG
AGGATACTCCTTTTTGCTAACGTACCACTTATTGGCTCGAAGGCGAATGG
GGGGCTTGGCATCCAGTACGTAGCCAGATAACAAAGTACTTGATGTGGCC
AGTCCAGGTTCGCGCACCTCGAGGGTCTCTAAATACCTGCGCAGATGAAA
CACATCGTAAATGATGTCATCATCCAGTTTAATGATAAACTTGGCCTGCT
TTTTGCACTCCTCAGAGACCCACTTTAATCCCATTACGTGTTTGTAGCTC
AGATTGCGATAGTCCTCGATGAAATTCCCCTGGAGAAGGTCCCCGAAACG
ATTCTGTTCGCTGGCCAGTTGATCCTGGCTTATAAAATGCTCTCTTGAAG
GCAGGGCTGCCAAGAGAAAAACTCTTCGCAGGCCCATTTCTTC

MXO02184.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-PB 1077 CG3038-RB 250..1074 843..19 4125 100 Minus
CG3038-PA 1167 CG3038-RA 340..1164 843..19 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-RA 1731 CG3038-RA 526..1350 843..19 4125 100 Minus
CG3038-RB 1630 CG3038-RB 425..1249 843..19 4125 100 Minus
CG3038-RC 1751 CG3038-RC 696..1263 586..19 2840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 244442..245266 19..843 4125 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:20:44 has no hits.

MXO02184.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:03 Download gff for MXO02184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-PA 340..1167 16..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:42 Download gff for MXO02184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-RB 425..1249 19..843 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:56 Download gff for MXO02184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-RB 425..1249 19..843 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:56 Download gff for MXO02184.3prime
Subject Subject Range Query Range Percent Splice Strand
X 244442..245266 19..843 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:42 Download gff for MXO02184.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 138475..139299 19..843 100   Plus

MXO02184.5prime Sequence

899 bp (821 high quality bases) assembled on 2007-01-19

> MXO02184.5prime
CAGTCGACATGCGCATGCGCGGACGAAGATTGCTTCCGATTATTTTGTCG
CTTCTTTTGATCGTCCTACTGAGTCTCTGTTACTTTTCGAATCACTTGAG
GGATTCAAGCCAGTCCCGCAAAAACGGTTTCTTGCTGCACTTACCACTCG
AAACGAAGAGGAATCCATCTAACCCTAATACTCCGTTAAGTAATCTTCTG
AATCTCACGGACTTCCACTACTTGCTGGCCAGTAATGTGTGTCGAAAGGC
AAAAAGAGAACTCTTAGCCGTTTTAATAGTTACTTCGTATGCCGGACACG
ATGCCTTGCGATCAGCTCACCGACAGGCAATTCCCCAAAGCAAACTGGAA
GAAATGGGCCTGCGAAGAGTTTTTCTCTTGGCAGCCCTGCCTTCAAGAGA
GCATTTTATAAGCCAGGATCAACTGGCCAGCGAACAGAATCGTTTCGGGG
ACCTTCTCCAGGGGAATTTCATCGAGGACTATCGCAATCTGAGCTACAAA
CACGTAATGGGATTAAAGTGGGTCTCTGAGGAGTGCAAAAAGCAGGCCAA
GTTTATCATTAAACTGGATGATGACATCATTTACGATGTGTTTCATCTGC
GCAGGTATTTAGAGACCCTCGAGGTGCGCGAACCTGGACTGGCCACATCA
AGTACTTTGTTATCTGGCTACGTACTGGATGCCAAGCCCCCCATTCGCCT
TCGAGCCAATAAGTGGTACGTTAGCAAAAAGGAGTATCCTCAGGCTTTAT
ATCCCGCCTATTTGTCGGGCTGGCTTTACGTGACCAACGTGCCAACAGCC
GAGAGGATTGTGGCGGAGGCGGAGAGGATGTCATTTTTTTGGATCGATGA
CACCTGGTTGACTGGAGTAGTAAAGACTCGTTTGGGTATTCCCCTTGAG

MXO02184.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-PA 1167 CG3038-RA 1..891 9..899 4430 99.8 Plus
CG3038-PB 1077 CG3038-RB 3..801 101..899 3970 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-RA 1731 CG3038-RA 187..1077 9..899 4440 99.9 Plus
CG3038-RB 1630 CG3038-RB 178..976 101..899 3980 99.9 Plus
CG3038-RC 1751 CG3038-RC 187..697 9..519 2555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 244715..245350 899..264 3165 99.8 Minus
X 23542271 X 245412..245670 267..9 1295 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:04:35 has no hits.

MXO02184.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:03 Download gff for MXO02184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-PA 1..891 9..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:30 Download gff for MXO02184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 181..1077 2..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:36 Download gff for MXO02184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 181..1077 2..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:36 Download gff for MXO02184.5prime
Subject Subject Range Query Range Percent Splice Strand
X 244715..245346 268..899 99 <- Minus
X 245412..245676 2..267 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:30 Download gff for MXO02184.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 138748..139379 268..899 99 <- Minus
arm_X 139445..139709 2..267 98   Minus