Clone MXO02185 Report

Search the DGRC for MXO02185

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:85
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptaur-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02185.3prime Sequence

746 bp (673 high quality bases) assembled on 2007-01-19

> MXO02185.3prime
ATGGTCTAGAAAGCTTGCCTGCGTGTGCGCCAGGATCCAAGGATGCACCA
TCACCTGATCCAGCGGTAGGCGGTGCTGCGGATTAAGGACCAGCAGCTTG
GAAATGAGATGGGATGCTGCCTTGGAAATGTGCTCCGGCAGTTTGTAGTC
CACCTTGAGAATCTTCTTGTAGGTCTCGTCATAGTTCTTCGAGTAGAAGG
GAGCGTGGCCCACTAGCAGCTCAAAGCAGAGCACACCCAGGCTCCATAGA
TCCACGTTTTTCGTGTGCGGCTTGCCCTGAACCATTTCGGGTGGCAAGTA
GTCGACAGTGCCGCACAGTGTCATGCGCATGGAGTTCGGCTCGTGCACGG
ACCAACCGAAGTCGGCGATCTTCAGGACGCCCTTGTGCCCGAGCAGCAAG
TTCTCCGGCTTGATGTCCCTGTGTATGATGTCCCGCTCATGCAGATAGAG
CAGCGCCGAGCACAACGCCTGAATATAGGTGGCCGACTGGCGTTCATCGA
AACGTTTCATCGGCTGTGCCTGCAAGGCGTTGAAAAGCGTTCCTTGTGGC
GCATACTCCAAGATCAGATATATGCGCACGTCGTCGTGAAAGTAGGCATA
CAGACGCAGGATATGCGGATGACGTAGGTGCGATTGTATCTCGATCTCAC
GACGCACCTGGTGCTCCACATTGGACTCGCCAATCTGGCGCTTAAAGAGC
ACTTTTAGGGCCACCACGAACTGGGATTCCTTTTCCCCGCAAATAA

MXO02185.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3068-PA 1236 aur-RA 515..1233 737..19 3595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
aurA-RA 1577 CG3068-RA 672..1401 746..19 3600 99.7 Minus
aurB-RA 1183 CG6620-RA 655..785 411..281 180 76.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11963932..11964650 737..19 3595 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:29:11 has no hits.

MXO02185.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:04 Download gff for MXO02185.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3068-PA 506..1236 16..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:16 Download gff for MXO02185.3prime
Subject Subject Range Query Range Percent Splice Strand
aur-RA 672..1405 15..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:57 Download gff for MXO02185.3prime
Subject Subject Range Query Range Percent Splice Strand
aurA-RA 672..1405 15..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:57 Download gff for MXO02185.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11963921..11964654 15..746 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:16 Download gff for MXO02185.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7789643..7790376 15..746 99   Minus

MXO02185.5prime Sequence

875 bp (773 high quality bases) assembled on 2007-01-19

> MXO02185.5prime
CAGTCGACATGTCCCATCCGTCTGACCATGTGCTGCGTCCCAAGGAAAAT
GCTCCGCACAGAATGCCAGAAAAATCAGCTGCAGTGCACAATATGCAAAA
GAACTTGCTATTGGGAAAGAAGCCCAACAGCGAGAATATGGCTCCAGCTA
GCAAACCCTTGCCAGGATCCTCTGGCGCTTTGATCAGGAAGCCAGGCCTA
GGAGGCTCCAATTCCATAGCTTCCTCCGAAGGAAACAACTTCCAAAAACC
CATGGTGCCGTCCGTGAAGAAGACCACATCAGAGTTTGCTGCTCCGGCTC
CAGTAGCACCTATCAAGAAGCCTGAGTCACTTTCCAAGCAGAAACCCACT
GCTGCGAGCTCTGAATCCTCCAAGGAACTGGGTGCGGCCAGCAGCTCCGC
TGAAAAAGAGAAAACCAAGACTGAAACCCAGCCCCAGAAGCCGAAGAAGA
CCTGGGAGCTCAACAACTTTGATATTGGTCGCCTGCTGGGACGGGGCAAG
TTTGGCAACGTTTATTTGGCGCGGGAAAAGGAATCCCAGTTCGTGGTGGC
CCTAAAAGTGCTCTTTAAGCGCCAGATTGGCGAGTCCAATGTGGAGCACC
AGGTGCGTCGTGAGATCGAGATACAATCGCACCTACGTCATCCGCATATC
CTGCGTCTGTATGCCTACTTTCACGACGACGTGCGCATATATCTGATCTT
GGAGTATGCGCCACAAGGAACGCTTTTCAACGCCTTGCAGGCACAGCCGA
TGAAACGTTTCGATGAACGCCAGTCGGCCACCTATATTCAAGCGTTGTGC
TCGGCGCTGCTCTATCTGCATGAGCGGGACATCATACACAGGAACATCAA
GCCGGAGAACTTGCTGCTCGGGCAC

MXO02185.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3068-PA 1236 aur-RA 1..867 9..875 4285 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
aurA-RA 1577 CG3068-RA 168..1035 8..875 4310 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11963832..11964284 423..875 2235 99.6 Plus
3R 32079331 3R 11963468..11963770 121..423 1515 100 Plus
3R 32079331 3R 11963291..11963405 8..122 575 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:45:44 has no hits.

MXO02185.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:04 Download gff for MXO02185.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3068-PA 1..867 9..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:06 Download gff for MXO02185.5prime
Subject Subject Range Query Range Percent Splice Strand
aur-RA 159..1035 1..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:51 Download gff for MXO02185.5prime
Subject Subject Range Query Range Percent Splice Strand
aurA-RA 159..1035 1..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:51 Download gff for MXO02185.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11963282..11963405 1..122 96 -> Plus
3R 11963470..11963770 123..423 100 -> Plus
3R 11963833..11964284 424..875 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:06 Download gff for MXO02185.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7789192..7789492 123..423 100 -> Plus
arm_3R 7789004..7789127 1..122 96 -> Plus
arm_3R 7789555..7790006 424..875 99   Plus