MXO02185.3prime Sequence
746 bp (673 high quality bases) assembled on 2007-01-19
> MXO02185.3prime
ATGGTCTAGAAAGCTTGCCTGCGTGTGCGCCAGGATCCAAGGATGCACCA
TCACCTGATCCAGCGGTAGGCGGTGCTGCGGATTAAGGACCAGCAGCTTG
GAAATGAGATGGGATGCTGCCTTGGAAATGTGCTCCGGCAGTTTGTAGTC
CACCTTGAGAATCTTCTTGTAGGTCTCGTCATAGTTCTTCGAGTAGAAGG
GAGCGTGGCCCACTAGCAGCTCAAAGCAGAGCACACCCAGGCTCCATAGA
TCCACGTTTTTCGTGTGCGGCTTGCCCTGAACCATTTCGGGTGGCAAGTA
GTCGACAGTGCCGCACAGTGTCATGCGCATGGAGTTCGGCTCGTGCACGG
ACCAACCGAAGTCGGCGATCTTCAGGACGCCCTTGTGCCCGAGCAGCAAG
TTCTCCGGCTTGATGTCCCTGTGTATGATGTCCCGCTCATGCAGATAGAG
CAGCGCCGAGCACAACGCCTGAATATAGGTGGCCGACTGGCGTTCATCGA
AACGTTTCATCGGCTGTGCCTGCAAGGCGTTGAAAAGCGTTCCTTGTGGC
GCATACTCCAAGATCAGATATATGCGCACGTCGTCGTGAAAGTAGGCATA
CAGACGCAGGATATGCGGATGACGTAGGTGCGATTGTATCTCGATCTCAC
GACGCACCTGGTGCTCCACATTGGACTCGCCAATCTGGCGCTTAAAGAGC
ACTTTTAGGGCCACCACGAACTGGGATTCCTTTTCCCCGCAAATAA
MXO02185.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3068-PA | 1236 | aur-RA | 515..1233 | 737..19 | 3595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurA-RA | 1577 | CG3068-RA | 672..1401 | 746..19 | 3600 | 99.7 | Minus |
aurB-RA | 1183 | CG6620-RA | 655..785 | 411..281 | 180 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11963932..11964650 | 737..19 | 3595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:11 has no hits.
MXO02185.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:04 Download gff for
MXO02185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3068-PA | 506..1236 | 16..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:16 Download gff for
MXO02185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-RA | 672..1405 | 15..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:57 Download gff for
MXO02185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurA-RA | 672..1405 | 15..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:57 Download gff for
MXO02185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11963921..11964654 | 15..746 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:16 Download gff for
MXO02185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7789643..7790376 | 15..746 | 99 | | Minus |
MXO02185.5prime Sequence
875 bp (773 high quality bases) assembled on 2007-01-19
> MXO02185.5prime
CAGTCGACATGTCCCATCCGTCTGACCATGTGCTGCGTCCCAAGGAAAAT
GCTCCGCACAGAATGCCAGAAAAATCAGCTGCAGTGCACAATATGCAAAA
GAACTTGCTATTGGGAAAGAAGCCCAACAGCGAGAATATGGCTCCAGCTA
GCAAACCCTTGCCAGGATCCTCTGGCGCTTTGATCAGGAAGCCAGGCCTA
GGAGGCTCCAATTCCATAGCTTCCTCCGAAGGAAACAACTTCCAAAAACC
CATGGTGCCGTCCGTGAAGAAGACCACATCAGAGTTTGCTGCTCCGGCTC
CAGTAGCACCTATCAAGAAGCCTGAGTCACTTTCCAAGCAGAAACCCACT
GCTGCGAGCTCTGAATCCTCCAAGGAACTGGGTGCGGCCAGCAGCTCCGC
TGAAAAAGAGAAAACCAAGACTGAAACCCAGCCCCAGAAGCCGAAGAAGA
CCTGGGAGCTCAACAACTTTGATATTGGTCGCCTGCTGGGACGGGGCAAG
TTTGGCAACGTTTATTTGGCGCGGGAAAAGGAATCCCAGTTCGTGGTGGC
CCTAAAAGTGCTCTTTAAGCGCCAGATTGGCGAGTCCAATGTGGAGCACC
AGGTGCGTCGTGAGATCGAGATACAATCGCACCTACGTCATCCGCATATC
CTGCGTCTGTATGCCTACTTTCACGACGACGTGCGCATATATCTGATCTT
GGAGTATGCGCCACAAGGAACGCTTTTCAACGCCTTGCAGGCACAGCCGA
TGAAACGTTTCGATGAACGCCAGTCGGCCACCTATATTCAAGCGTTGTGC
TCGGCGCTGCTCTATCTGCATGAGCGGGACATCATACACAGGAACATCAA
GCCGGAGAACTTGCTGCTCGGGCAC
MXO02185.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3068-PA | 1236 | aur-RA | 1..867 | 9..875 | 4285 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurA-RA | 1577 | CG3068-RA | 168..1035 | 8..875 | 4310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11963832..11964284 | 423..875 | 2235 | 99.6 | Plus |
3R | 32079331 | 3R | 11963468..11963770 | 121..423 | 1515 | 100 | Plus |
3R | 32079331 | 3R | 11963291..11963405 | 8..122 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:45:44 has no hits.
MXO02185.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:04 Download gff for
MXO02185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3068-PA | 1..867 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:06 Download gff for
MXO02185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-RA | 159..1035 | 1..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:51 Download gff for
MXO02185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurA-RA | 159..1035 | 1..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:51 Download gff for
MXO02185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11963282..11963405 | 1..122 | 96 | -> | Plus |
3R | 11963470..11963770 | 123..423 | 100 | -> | Plus |
3R | 11963833..11964284 | 424..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:06 Download gff for
MXO02185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7789192..7789492 | 123..423 | 100 | -> | Plus |
arm_3R | 7789004..7789127 | 1..122 | 96 | -> | Plus |
arm_3R | 7789555..7790006 | 424..875 | 99 | | Plus |