MXO02187.3prime Sequence
844 bp (693 high quality bases) assembled on 2007-01-19
> MXO02187.3prime
ATGGTCTAGAAAGCTTGCGAAGAGATCGTAAAAATAGTTTAGGCCTTGGC
CAAGTTCCCAGATTGAAATGCCAGTGCCCAGTTCCTGGGCGAGCTTTATT
CGCTCGTTTATGGAATAGAGAGTGGGATAAAAGACAATGTGGCGACCGTC
ATCGTTTTTGATTTCAAAGAAATTTTCCACATCCCGCTCATCGTAAGTTA
GGTGCTTCTTCACATGCCTGACTAGATCCAAGTACTGGGAGAAGGTGATG
GGTCCACCTCCATCGGGCGTGTAATCATTCCCGTACATATTCAGTCCCAA
CAGAATTTTAGCCCTCTTAGCCGTCATATCAGCGCAACCTTCTGGAGCTA
TTGTCTCCACAGCCTTACGGACGAAATATAATGGTGCATTTGCTCCGGGA
CGCTGCACGCTGGAGAAGTCGTAAGTCATCAGAGAGAAGGCGTATATGTG
CTTGAACAGCTTGTCCATGTGCTTTTCTCCAAAAAGGTGGCCTGTTTCCT
TGCGGAATGGAGGAATGACCAAAATGAGTCGCAGCTGTTGCTTTTGTAGT
TCTTTGGCCATTTGCAAAACCAGTGTGTACAGAATTTTGTCATCTATGCG
TCCAGCTAGCTGGGACCACACCTCCAGGACGAGTCCATCGAAGCCATTAT
CCTTGCAGCACTTGATCAGCACGTCGTTGACTTTCGTCCTCTCCTGGGCG
TCGCTAAGCAAGAGCTTAATGTCCCGATCAGTGAAGTGATCGAATATAAA
ACGGGGAAACACTTTAACCGTTCGCTGATTGTGCACCTGTTTACCCTTTC
TCCGGACATCGGTTAGCCAACCCGCATCGATGTCATGGGTTCCG
MXO02187.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8460-PA | 1209 | CG8460-RA | 381..1206 | 844..19 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8460-RA | 1368 | CG8460-RA | 481..1306 | 844..19 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8198148..8198548 | 558..158 | 2005 | 100 | Minus |
| 2L | 23513712 | 2L | 8197877..8198082 | 763..558 | 1030 | 100 | Minus |
| 2L | 23513712 | 2L | 8198609..8198751 | 161..19 | 700 | 99.3 | Minus |
| 2L | 23513712 | 2L | 8197739..8197821 | 844..762 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:57 has no hits.
MXO02187.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:05 Download gff for
MXO02187.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8460-PA | 381..1209 | 18..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:46 Download gff for
MXO02187.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8460-RA | 481..1311 | 11..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:03 Download gff for
MXO02187.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8460-RA | 481..1311 | 11..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:03 Download gff for
MXO02187.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8197739..8197821 | 762..844 | 100 | -> | Minus |
| 2L | 8197879..8198082 | 558..761 | 100 | -> | Minus |
| 2L | 8198149..8198548 | 158..557 | 100 | -> | Minus |
| 2L | 8198613..8198756 | 11..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:46 Download gff for
MXO02187.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8197739..8197821 | 762..844 | 100 | -> | Minus |
| arm_2L | 8197879..8198082 | 558..761 | 100 | -> | Minus |
| arm_2L | 8198149..8198548 | 158..557 | 100 | -> | Minus |
| arm_2L | 8198613..8198756 | 11..157 | 97 | | Minus |
MXO02187.5prime Sequence
847 bp (721 high quality bases) assembled on 2007-01-19
> MXO02187.5prime
CAGTCGACATGCGTGCGCCTGATGCGCTCCTGCTCCGCGTCGCTCTCCTG
CTTCTACTGCTGACCACCGTCCGCGGAACCCTCGCCCCGGACAGCCACAA
ATCGAAGAGCAAGACCAAGGAGAGTGCTCTGCGTGGCGGTCCGCAAGACC
AAGATGTTTTCGATCTGGGCTTGGTTAGTCCCGAGCCCCTGGCCAAGGAT
ATCGTGAGCAATCATCGCGGGTACTTCAAGGAGACGGGATTGCGACGCTT
CAATGGCACCACCTTGGGCTATGTGACTCCATGGAACTCGCATGGCTATG
ATGTGGCTAAGATATTTGCCAAGAAGTTCGACATTATCTCGCCGGTTTGG
CTGCAGATTGTTAAGCAGGGAGATCGTTATGCCGTAGCCGGAACCCATGA
CATCGATGCGGGTTGGCTAACCGATGTCCGGAGAAAGGGTAAACAGGTGC
ACAATCAGCGAACGGTTAAAGTGTTTCCCCGTTTTATATTCGATCACTTC
ACTGATCGGGACATTAAGCTCTTGCTTAGCGACGCCCAGGAGAGGACGAA
AGTCAACGACGTGCTGATCAAGTGCTGCAAGGATAATGGCTTCGATGGAC
TCGTCCTGGAGGTGTGGTCCCAGCTAGCTGGACGCATAGATGACAAAATT
CTGTACACACTGGTTTTGCAAATGGCCAAAGAACTACAAAAGCAACAGCT
GCGACTCATTTTGGTCATTCCTCCATTCCGCAAGGAAACAGGCCACCTTT
TTGGAGAAAGCACATGGACAAGCTGTTCAAGCACATATACGCCTTCTCTC
TGATGACTTACGACTTCTCCAGCGTGCAGCGTCCCGGGAGCAATGCA
MXO02187.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8460-PA | 1209 | CG8460-RA | 1..830 | 9..837 | 4110 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8460-RA | 1368 | CG8460-RA | 95..935 | 3..843 | 4145 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8197287..8197565 | 3..281 | 1380 | 99.6 | Plus |
| 2L | 23513712 | 2L | 8197877..8198082 | 470..675 | 1030 | 100 | Plus |
| 2L | 23513712 | 2L | 8197632..8197821 | 282..471 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 8198148..8198311 | 675..837 | 770 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:33 has no hits.
MXO02187.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:05 Download gff for
MXO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8460-PA | 1..839 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:35 Download gff for
MXO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8460-RA | 93..939 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:52 Download gff for
MXO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8460-RA | 93..939 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:52 Download gff for
MXO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8198149..8198320 | 676..846 | 98 | | Plus |
| 2L | 8197632..8197821 | 282..471 | 100 | -> | Plus |
| 2L | 8197879..8198082 | 472..675 | 100 | -> | Plus |
| 2L | 8197285..8197565 | 1..281 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:35 Download gff for
MXO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8197285..8197565 | 1..281 | 99 | -> | Plus |
| arm_2L | 8197632..8197821 | 282..471 | 100 | -> | Plus |
| arm_2L | 8197879..8198082 | 472..675 | 100 | -> | Plus |
| arm_2L | 8198149..8198320 | 676..846 | 98 | | Plus |
