MXO02188.3prime Sequence
828 bp (738 high quality bases) assembled on 2007-01-19
> MXO02188.3prime
ATGGTCTAGAAAGCTTGCTACCTCCTTCTTGAGGACCCTGGACAGCCGTC
TAAAATGGCCAAGGATGCACTGTCTCCGGTGCCGCAGGCATACCCGCTCG
CTGCTGAAACGCTTCAAGCAAACTGAGCAACGTCTGGGATCACCTCTTCC
ATTGGGCAACCCGTTGTGTTCGCGAAATAGGACGACCACTTTCGCCTTGG
CACAACTCTGTTCTTTTTTTCGGTGTACCAAAAGAGAGGTGGTGGTCTTG
AAGTAACGTTTGCACTGAAGACATCTGTAGCACTTCCTGCCGCTATGGTT
TCTCAGGTGCCTGAGCAACTGCATCTCTGAGTGGCTCATGGCGTTGCAGA
GTAGATGTGGGCATTTAAAGAGCATCGATGACTTCCTGGGCGCTAGAGCG
GGACAGCTCAGACTGTGTTGCTTCAATTGTTTCTGGTGGTCCAGACGCTG
ACCACAGCGAAAGCACAGAGCACCAGGTCCATAGTGCGCGGTCATGTGGC
TCTGGTGCTCCAGCAAGGTTTTGGCCACATCGCCGCACACCGCGCACTCC
ATCATGCCGTTGGGAAATATGAATGTGTTCTCGCTCACGTAGGTGAGAAA
TTTGTCGGAATTGGAGGCCTCAGAACCGGTATCCTTTGGCCGTTCCTCTG
GTAAATACCACTCCTCCGAATCGCGACGGCATTGAATGCCCGCATCCTTA
GTGCCCGCATTCTCTGTTTGAATGGCGCGCTCTCTGCGCGGCACCATAGC
CTCGTTCGCAAACATTCCAGTGACCTCGTTGAGTCTCTTCTGCTGTACGG
ATTTCTTGGGAGACTCTGTAACGCCCTC
MXO02188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33213-PA | 1026 | CG33213-RA | 222..1020 | 820..22 | 3995 | 100 | Minus |
| CG33221-PA | 1314 | CG33221-RA | 1161..1308 | 169..22 | 515 | 93.9 | Minus |
| CG33221-PA | 1314 | CG33221-RA | 283..331 | 741..693 | 220 | 97.9 | Minus |
| CG33221-PA | 1314 | CG33221-RA | 222..282 | 820..760 | 205 | 93.4 | Minus |
| CG33221-PA | 1314 | CG33221-RA | 536..588 | 812..760 | 165 | 92.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33213-RA | 1279 | CG33213-RA | 394..1197 | 825..22 | 4005 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27918264..27919067 | 22..825 | 4005 | 99.9 | Plus |
| X | 23542271 | X | 3797588..3798373 | 22..825 | 2905 | 91 | Plus |
| X | 23542271 | X | 3798561..3798679 | 689..825 | 275 | 81.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:30 has no hits.
MXO02188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:06 Download gff for
MXO02188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-PA | 215..1026 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:45 Download gff for
MXO02188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 405..1217 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:11 Download gff for
MXO02188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 392..1204 | 15..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:11 Download gff for
MXO02188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27918257..27919069 | 15..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:45 Download gff for
MXO02188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23743979..23744791 | 15..828 | 99 | | Plus |
MXO02188.5prime Sequence
801 bp (745 high quality bases) assembled on 2007-01-19
> MXO02188.5prime
CAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGGCCGGTCAA
CCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAGATGAAGTC
TATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGTGGAGACCA
AGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAGTGAAAGAA
CTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCCAAGAAATC
CGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGCGAACGAGG
CTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATGCGGGCACT
AAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGGTATTTACC
AGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTCCGACAAAT
TTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACGGCATGATG
GAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAGCACCAGAG
CCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCGCTGTGGTC
AGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGAGCTGTCCC
GCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCACATCTACT
CTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCACCTGAGAA
ACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAACGTTACTTC
A
MXO02188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33213-PA | 1026 | CG33213-RA | 1..793 | 9..801 | 3965 | 100 | Plus |
| CG33221-PA | 1314 | CG33221-RA | 589..1081 | 309..801 | 1815 | 94.7 | Plus |
| CG33221-PA | 1314 | CG33221-RA | 98..282 | 106..290 | 525 | 91.3 | Plus |
| CG33221-PA | 1314 | CG33221-RA | 401..588 | 103..290 | 490 | 90.4 | Plus |
| CG33221-PA | 1314 | CG33221-RA | 1..61 | 9..69 | 255 | 96.7 | Plus |
| CG33221-PA | 1314 | CG33221-RA | 283..331 | 309..357 | 220 | 97.9 | Plus |
| CG33221-PA | 1314 | CG33221-RA | 336..367 | 38..69 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33213-RA | 1279 | CG33213-RA | 174..970 | 5..801 | 3970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27918491..27919287 | 801..5 | 3970 | 99.9 | Minus |
| X | 23542271 | X | 3797815..3798565 | 801..33 | 2670 | 90.1 | Minus |
| X | 23542271 | X | 3798561..3798899 | 361..5 | 940 | 84.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:36 has no hits.
MXO02188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:06 Download gff for
MXO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-PA | 1..792 | 9..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:48 Download gff for
MXO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 184..982 | 1..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:15 Download gff for
MXO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 171..969 | 1..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:15 Download gff for
MXO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27918492..27919290 | 1..800 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:48 Download gff for
MXO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23744214..23745012 | 1..800 | 99 | | Minus |
