Clone MXO02189 Report

Search the DGRC for MXO02189

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:89
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG8924-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02189.3prime Sequence

823 bp (650 high quality bases) assembled on 2007-01-19

> MXO02189.3prime
ATGGTCTAGAAAGCTTGCGATCATGTGCAGCTTCTGATCGTTGAGTTTGA
ATGCCGCCGCATCGCTATGGAGGTGAAAAGGCACAATATCACCTGTTGTG
GCCATATCAAATGATGGTGACATAGACGTTGCCGTTGCAGTTGCCGGACT
ATTGCTGCCACTGGTATTTGCGATGCCCGCCTTGAGATGTAGGCTGTCCA
TGGACATTTGCTGAGACTGCGTGTGAGGAAGGGGATTGGTGTGGATATGC
GGATGGGCTGGGGGATGAGTTATGCTCGCTGGGACGGTTGAGAGTTTTCC
TGAGTTTGTTGTGATTATTATGTTTCCGGCATGGGAAGCACCACGTCCAC
GTTTCCGCTTCGGAAGAATTCCTTTTCGCGCCATATAGAAACGAATGGTT
GAGACAGGAATATTGAACATATTGCTGACAGTTTGGAATGTCTCGCCCTT
CGAAACACATTTGGCCGCTTGTGCTAGAGATGCTTCTGAACGTCGAACGC
GCTTATATGAAGTATAACCATCGATCGAGCTATGGCTCAGTCCTCCGGAA
GTATTGGCCGATGTATCGAGATCAGTGTCAAGGCTGAGGGATAGCCCGGA
TCCGCATGGCACTCCTGTCGCAAAACTGCTGTCATTGTTTTCATCATGAG
CGGCCACATAGTTGTGGTCGTCCTCAACATTTGAATCCAAGTATTGCTGC
TGCTGAAGCTGCATTTGCATCCTCGCCTGCTGCAGGGATAGGTGGACATT
CATTTTGTTGTCAACGGCTTGCGCAGATATATTGCAATCATCGAATTGCT
CCCCGTANGCATTCAAATTGTTC

MXO02189.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-PB 1545 CG8924-RB 738..1542 823..19 3981 99.7 Minus
CG8924-PA 1545 CG8924-RA 738..1542 823..19 3981 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-RB 2575 CG8924-RB 1374..2178 823..19 3999 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15943348..15944052 723..19 3525 100 Minus
X 23542271 X 15943189..15943291 823..721 489 98.1 Minus
Blast to na_te.dros performed 2014-11-28 19:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 1368..1426 607..550 112 67.8 Minus

MXO02189.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:07 Download gff for MXO02189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-PA 738..1545 15..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:13 Download gff for MXO02189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 1374..2181 15..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:36 Download gff for MXO02189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 1374..2181 15..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:36 Download gff for MXO02189.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15943189..15943290 722..823 98 -> Minus
X 15943350..15944055 15..721 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:13 Download gff for MXO02189.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15837222..15837323 722..823 98 -> Minus
arm_X 15837383..15838088 15..721 99   Minus

MXO02189.5prime Sequence

843 bp (762 high quality bases) assembled on 2007-01-19

> MXO02189.5prime
CAGTCGACATGAGCGGCGCTACACAGGAATTTTGTGTACGCTGGAACAGC
CATTTGGGCAGCATTGGAGCTGCTTTTCCGCAGCTGCTAGCAGGCCAGAG
ATTCGTGGATGTAACACTCGCATGCGAAGGCCAACAGGTGCACTGCCATC
GTCTGGTGTTGGCCGCTTGTTCCACCTACTTTGAGGCAATACTAGCGGAG
CATCCTTGCAAGCACCCGGTCATCATATTGCCCAGGGAGATCAAGCTATG
GGAGATCCAGGCGCTTGTGGACTTCATGTACAAGGGAGAGGTCAATGTCA
CGCAAGCCGGTCTTGGCCAGTTGCTTCGCTGTGCCGAACAACTGCAGATT
CGCGGTCTATACGGCTCTGAGGCACCGATAAACTACAAGAAACTCCAGCA
GGCGAGTCTCGAGGCTGCTAAGGATCCAGCTGCAACCACAGCGCGAAGCT
TCAAGCATGTGGACAGCGCGGAAACGGACGATGCAGCCACTAATTCAACC
ACCTCAACAACAATGACCACCTCCTCCGCTCCACCGCTACCGGTTAACCA
TCAGCAACCCACAGTATTGAAGCGCCAGAATCCCGATGCTCGGCAGCAGC
AGCAACAGCAGCAGCAGCAGCAGGTGCAGCAGCGACCCCAGATAAATGGC
AGTAATGCTCAACAGCCATCTAAGGCCACCTCTACGAACGTTTTGGGCAG
CCACTCGAATGCACCAACCGAGGATGACTCCGGCGACGAGGTGCCGAACA
ATTGGAATGCCTACGGGGAGCAATTCGATGATTGCAATATATCTGCGCAA
GCCGTTGACAACAAAATGAATGTCCACCTATCCCTGCAGCAAG

MXO02189.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-PB 1545 CG8924-RB 1..833 9..841 4165 100 Plus
CG8924-PA 1545 CG8924-RA 1..833 9..841 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-RB 2575 CG8924-RB 637..1469 9..841 4165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15942452..15943284 9..841 4165 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:29:19 has no hits.

MXO02189.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:07 Download gff for MXO02189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-PA 1..834 9..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:20 Download gff for MXO02189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 630..1470 1..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:02 Download gff for MXO02189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 630..1470 1..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:02 Download gff for MXO02189.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15942445..15943285 1..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:20 Download gff for MXO02189.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15836478..15837318 1..843 99   Plus