Clone MXO02190 Report

Search the DGRC for MXO02190

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:90
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptEnt1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02190.3prime Sequence

873 bp (710 high quality bases) assembled on 2007-01-19

> MXO02190.3prime
ATGGTCTAGAAAGCTTGCAAGCATTTGAACAAATACAAGGCTGAGCAGTG
ATCCCACAGCCATGCCACAGCTCAAAGCAGCTGCCATTATCGACGAAGCC
AGCTCCTTTTCATGCTGCTTTACGCGTTTAGGCGCCATTATAAGTAGTAT
GTTCGTAAAATATCCGTTGGACAAGGCAAACATTACCATCATCGCTATGA
AAGTATAGTCGTGTTTTACCAAAACTGGCAGAAAGCTGTGTTCGCTGGAG
TTTGAACATAGAAATAACGGAACAAACGCCATGCGCACTACAATAAATAG
TAGCGAAGTGTTCTGGTTTAATGGTCGCTCCATCCAGCCAGCAAACAGAC
GACCAAAATAGTCACCGCAGTTAAATATCAGGTAGTTCACGACGGGCAGA
AAATAAACATCTGTCCACACGCTGTGGCCGTACTCTGACTGCATAAGCAC
TGTAACTGCCGGATAGACAGACAGGGTCGTGGTATAGAGGAGCGCTAGGG
AAATGGCATGCAGATAGATCTTCGACATGACCTGACGCAAAATAGGCTCA
AGCGGCAAGCCCTCAGCGCTTCCATTCCGGTTGTGCGAGGGCACTGCCCG
GATGACCTTGTACTTGTCGCCACCTTCGAGATAATACCTAAAGAAAGGCT
TTCGAGCCAGGATTACGTAGCACACAATGCAAAGCAGGATGAGCACTCCT
CCCACAATGAAGAAGATGAATGCAGTGGTATTGGGACCCGTGTCGAATGC
AAGCACAAGAATGAAGGCCAGGGCTGTGAGGATACCACCAAGAGCCTGTC
CGCTAACCACAGCGGTGATAAACTCGGAGGGAATAGACCAGCGACTCCGT
AGAGGGCTCCCGACATTGTAGCC

MXO02190.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11907-PA 1431 Ent1-RA 573..1428 873..19 4240 99.8 Minus
CG11907-PB 1431 Ent1-RB 573..1428 873..19 4240 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1-RC 1905 CG11907-RC 694..1549 873..19 4255 99.9 Minus
Ent1-RB 1923 CG11907-RB 712..1567 873..19 4255 99.9 Minus
Ent1-RA 1972 CG11907-RA 761..1616 873..19 4255 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 356367..356830 411..873 2270 99.8 Plus
2L 23513712 2L 355921..356316 19..414 1980 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:28:36 has no hits.

MXO02190.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:08 Download gff for MXO02190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11907-PB 573..1431 16..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:18 Download gff for MXO02190.3prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 761..1622 11..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:11 Download gff for MXO02190.3prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 761..1622 11..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:11 Download gff for MXO02190.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 355915..356312 11..410 99 <- Plus
2L 356367..356830 411..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:18 Download gff for MXO02190.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 355915..356312 11..410 99 <- Plus
arm_2L 356367..356830 411..873 99   Plus

MXO02190.5prime Sequence

827 bp (825 high quality bases) assembled on 2007-01-19

> MXO02190.5prime
CAGTCGACATGCCAGGCACCAGTGACACACGACGACTGGTGGACGCCCTG
GACGAGGATGACGAGATTCTGGGCACGGAGGGCAGCTTCGTTCCCGCTTT
TCGTCCGCAGGACCACCATGCGGATGAGCAATGTCTCATGGAACGCCAGC
AGGACGAGGTAGTTTTGGTGTCCAACGAACCCGAGAGTGGACGACTCTTC
ACCTACCTCGTGTTCTACCTGTTGGGCATTGGTACCATGACCCCGTGGAA
TTTCTTTGTGACTGCGGAAGATTACTGGAAGTACAAGTTCCGGAATGCAT
CGATTAATAACACAGACCTGGAGGAAGAGCTCACCCCGTTGCAGAAGAGT
TTTACCTGCGACTTGGCTCTCACGGCCACTATTTCTGGGACTACATTTCT
GCTGCTAAACGCCATTTTCGGACACCATGTGTCCCTGCGCACCAAGATGT
TAGGAACGCTGTGGATGATCCTCATCCTTTTCGGGGTTACAACTGGCTTC
GTGGAGATCAACACAGACACGTGGCAGGAACAGTTTTTCCTAATCACTCT
CATCATTGTAGTGCTGCTAAATATATCTGCGGCTACAATGTCGGGAGCCC
TCTACGGAGTCGCTGGTCTATTTCCCTCCGAGTTTATCACCGCTGTGGTT
AGCGGACAGGCTCTTGGTGGTATCCTCACAGCCCTGGCCTTCATTCTTGT
GCTTGCATTCGACACGGGTCCCAATACCACTGCATTCATCTTCTTCATTG
TGGGAGGAGTGCTCATCCTGCTTTGCATTGTGTGCTACGTAATCCTGGCT
CGAAAGCCTTTCTTTAGGTATTATCTC

MXO02190.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11907-PA 1431 Ent1-RA 1..819 9..827 4095 100 Plus
CG11907-PB 1431 Ent1-RB 1..819 9..827 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ent1-RC 1905 CG11907-RC 122..940 9..827 4095 100 Plus
Ent1-RB 1923 CG11907-RB 140..958 9..827 4095 100 Plus
Ent1-RA 1972 CG11907-RA 189..1007 9..827 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 356891..357191 573..273 1505 100 Minus
2L 23513712 2L 357423..357686 272..9 1320 100 Minus
2L 23513712 2L 356584..356837 827..574 1270 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:29:29 has no hits.

MXO02190.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:08 Download gff for MXO02190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11907-PB 1..819 9..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:25 Download gff for MXO02190.5prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 181..1007 1..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:10 Download gff for MXO02190.5prime
Subject Subject Range Query Range Percent Splice Strand
Ent1-RA 181..1007 1..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:10 Download gff for MXO02190.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 357423..357694 1..272 98   Minus
2L 356584..356837 574..827 100 <- Minus
2L 356891..357191 273..573 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:25 Download gff for MXO02190.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 356584..356837 574..827 100 <- Minus
arm_2L 356891..357191 273..573 100 <- Minus
arm_2L 357423..357694 1..272 98   Minus