Clone MXO02192 Report

Search the DGRC for MXO02192

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:92
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptImpE2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02192.3prime Sequence

832 bp (699 high quality bases) assembled on 2007-01-19

> MXO02192.3prime
ATGGTCTAGAAAGCTTGCGAGAGCCACTGCATCGGTGGCCACTGGATGAT
TCTGGACAGCATTTCCCTCCTCGCCGGCATCGTCGTTGACCACAATAACC
TCGTTGGACGGTACGCCAGCATCCTCGAAGGAATCATCAATATTTTCGCC
ACTCGCACGCAGCTCATTATCGGATTCCGGAACGAATTCACCCACCTCAT
CATTGGCAGGATCGATTTTGTCATCTACGGCTGGCTTCTCTGTGGCCTGA
GTGGCTGGTGCGGCAGCTGGTGCGTTCTGTGGACGATTGCCGCCCAGGAA
GTTGATAATTCCCTGCAGAGGATTGCCACTTTGCTGGGCAGGCGGTGCGG
CAGCCGTGGCATTGTTATTGCCACCGAAAACATTGTTGACAAACTGCTGG
ATGGGACCTGGTGGACGCGGAGTGGTGGACACCGCCTGCTGCTGCTGGCC
AGTCAAGCTGGACAGGGTGTTCTGGAACTGATTGCCCAGGTTGCTGGCAA
ACTGTTGGATGCCCTGGAAGGCCTGGGTGGTGGCATTGACGGCACTTTGG
GCCGCATTTTGCACGGCCTGTTGGGCGGAGGTGATGGCGGCCTGGGGATT
CAGGAAACCGGGCACCGTGGGAGCCGGAGTTGCAGGTGCCGCAGCGGCGG
CATCATCCGCCTGGACTTGTGCTGCTGCTGGAGCGGCAGCAGCAGCTGGC
TGGGGCTGGAACTGATTGAGGAACTGACCAATTGGCGAGTTCTGGATCAA
CTGCTGGACAAAGTTGCCCTGGGTGGTGCTCTGCTGGGTGGGCGTGGCTT
GGGTGGCTTGACGGACCTGAGGATGCGCGGCG

MXO02192.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1934-PA 1401 ImpE2-RA 585..1398 832..19 4070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE2-RA 1708 CG1934-RA 664..1477 832..19 4070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3511205..3512018 19..832 4070 100 Plus
Blast to na_te.dros performed 2014-11-28 22:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 628..712 712..628 137 62.4 Minus

MXO02192.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:09 Download gff for MXO02192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1934-PA 585..1401 15..832 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:50 Download gff for MXO02192.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpE2-RA 664..1480 15..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:09 Download gff for MXO02192.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpE2-RA 664..1480 15..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:09 Download gff for MXO02192.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3511202..3512018 15..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:50 Download gff for MXO02192.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3511202..3512018 15..832 99   Plus

MXO02192.5prime Sequence

847 bp (774 high quality bases) assembled on 2007-01-19

> MXO02192.5prime
CAGTCGACATGAAGCCCGTTGCCTTGATCCTGGTTTTCCTGGCCATTAGC
CAAGCCAGAGTACTCAACTTGCCCAAGGAGGCGATCGATATTCCTGTGGC
CATTGTCGAGGATAAGGAGCCACCAGTAGCTTTGTCTTTGGTCAAAGAGG
AAGTTAAGGCAGAGGAAGTTAAGCCAGAGGAAGTGAAACCAATTGCTCAA
GAAGAGAAAGCCAAGGATCTCAAGGAGGAAGTTAAGCCAGAAATTAAGCC
TGAAATCAAAGAGCAGCCTAAGCCTGATATAAAAGACGAGATTAAGGAAG
ATTTAAAGGCAGACATTAAGGAGGAGCTCAAGGAGAAGATTGAAGAGCAG
ATCAACGAGTTGCCTAATGCTAAGCCCCTGGAGCTGAAGGAAAAATCCCT
GGAAGCTGAGGAGAAACCTCAGGAAATCAAAGAAGAAGTTCAGCAGCCAG
AAATCAAAAAAGAGGCCACTGAAATCAAAGAGGAACCTGCTCAGAACATT
CTGAAATCTCTGCCAGCTGAAGAGACTGTCGTTGTGCCTGCCGAGGAACT
TTCCCCGAATCCGGTGGAGCAAGAGCAGTCGGAAAACCAGGACGCCGCGC
ATCCTCAGGTCCGTCAAGCCACCCAAGCCACGCCCACCCAGCAGAGCACC
ACCCAGGGCAACTTTGTCCAGCAGTTGATCCAGAACTCGCCAATTGGTCA
GTTCCTCAATCAGTTCCAGCCCCAGCCAGCTGCTGCTGCCGCTCCAGCAG
CAGCACAAGTCCAGGCGGATGATGCCGCCGCTGCGGCACCTGCAACTCCG
GCTCCCACGGTGCCCGGTTTTCCTGAATCCCCAGGCCGCCATCACCT

MXO02192.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1934-PA 1401 ImpE2-RA 1..838 9..847 4155 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE2-RA 1708 CG1934-RA 80..917 9..847 4170 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3511765..3512602 847..9 4145 99.9 Minus
Blast to na_te.dros performed 2014-11-28 20:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 628..712 713..797 137 62.4 Plus

MXO02192.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:09 Download gff for MXO02192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1934-PA 1..838 9..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:57 Download gff for MXO02192.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpE2-RA 73..917 1..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:34 Download gff for MXO02192.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpE2-RA 73..917 1..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:34 Download gff for MXO02192.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3511765..3512609 1..847 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:57 Download gff for MXO02192.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3511765..3512609 1..847 99   Minus