MXO02193.3prime Sequence
806 bp (712 high quality bases) assembled on 2007-01-19
> MXO02193.3prime
ATGGTCTAGAAAGCTTGCGGTGATTGGGTTTCGGATTTGGGGTTTGTGGA
TCACGCTGAACTGCAGAATCCACACTACTCGGCATCCAGCGAGAAGCAAG
GCAGTCCGGCCAGCGCCGGATGTGTGGATTGCTGGGAGGAGCGGTGTCGC
TGCGGCATTGGCTGACCATTCTCGCGGTACGTCTTCAGTTTCGTCTCCAT
CGCTCTTAAGCGAATGCTGCTGGTTATATTCGTTTCTATTAACTAAACTG
CCATTGAGGGCGTTGACGCTGACGCTGGTGGCTCTTGTGGCGACAGCATT
GTCGTGTTTTACCAATTCGCCATTGGCAACAATACCATTTGGCAGCGAGG
CGGACGAGTTCATCGAGCTGTTGACCGTATTTGTGTCGTTTGCCGTGGGA
ACGCTCGTTCCATTGACCACTGGGGTAAAGCGTGACTTGACGTTCAGCTC
TTGTTTGAGATCTCTCGTCTCATCCATTAATCGCTGTAGTTTTTCCTGCA
GCAATCCCTTTTCATCCACTTCCAGCTCCAGAAGGGCGTTCTTCTCGTAG
GCCTGATCCAGCATCTTCTCGAAATTCTCTATGCTTTCGTTAAGTATGCG
ATGGGCACGTTCCAAATCGTCGTTTTTCTGCTCCAGCTGCCGCAGGTACA
CCTTCATGGTGTCGCGATCCTTCTTCACCGTTTCCAGCTGTTTCTCCATG
TTTGACATATCGATGCCATGCAATTCCAACTTGAGCTTGAGAGACTCGTT
TTCCCGCTCAAACATTGTGAGTTTGGCTGTGAGATCTTTGATTATACTCT
GCTTCT
MXO02193.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8104-PA | 954 | nudE-RA | 164..951 | 806..19 | 3915 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudE-RA | 1975 | CG8104-RA | 558..1345 | 806..19 | 3925 | 99.9 | Minus |
| nudE-RD | 1246 | CG8104-RD | 558..1161 | 806..203 | 3005 | 99.8 | Minus |
| nudE-RF | 2133 | CG8104-RF | 558..1160 | 806..204 | 3000 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9900421..9900696 | 737..462 | 1365 | 99.6 | Minus |
| 3L | 28110227 | 3L | 9900759..9901019 | 463..203 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 9902151..9902335 | 203..19 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 9900236..9900306 | 806..736 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:26 has no hits.
MXO02193.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:10 Download gff for
MXO02193.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8104-PA | 164..954 | 18..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:58 Download gff for
MXO02193.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 558..1345 | 19..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:12 Download gff for
MXO02193.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 558..1345 | 19..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:12 Download gff for
MXO02193.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9900236..9900306 | 736..806 | 100 | -> | Minus |
| 3L | 9900423..9900696 | 462..735 | 99 | -> | Minus |
| 3L | 9900761..9901018 | 204..461 | 100 | -> | Minus |
| 3L | 9902151..9902335 | 19..203 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:58 Download gff for
MXO02193.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9893336..9893406 | 736..806 | 100 | -> | Minus |
| arm_3L | 9893523..9893796 | 462..735 | 99 | -> | Minus |
| arm_3L | 9893861..9894118 | 204..461 | 100 | -> | Minus |
| arm_3L | 9895251..9895435 | 19..203 | 100 | | Minus |
MXO02193.5prime Sequence
768 bp (739 high quality bases) assembled on 2007-01-19
> MXO02193.5prime
CAGTCGACATGGAGTCGCCCCCGATGTTCAATAGTGTGGAAGATGAGTGC
AGATATTGGAAGGAACGATCTAAGCAGTACCACAAAGAGTGGACAGACGT
GAAACAGGAGTACGACGAGTTTGTGGAGCAGTCCCGCGAAATGGAAATAG
AAATGGACGCCACTCTGGACCAGAAGCAGAGTATAATCAAAGATCTCACA
GCCAAACTCACAATGTTTGAGCGGGAAAACGAGTCTCTCAAGCTCAAGTT
GGAATCGCATGGCATCGATATGTCAAACATGGAGAAACAGCTGGAAACGG
TGAAGAAGGATCGCGACACCATGAAGGTGTACCTGCGGCAGCTGGAGCAG
AAAAACGACGATTTGGAACGTGCCCATCGCATACTTAACGAAAGCATAGA
GAATTTCGAGAAGATGCTGGATCAGGCCTACGAGAAGAACGCCCTTCTGG
AGCTGGAAGTGGATGAAAAGGGATTGCTGCAGGAAAAACTACAGCGATTA
ATGGATGAGACGAGAGATCTCAAACAAGAGCTGAACGTCAAGTCACGCTT
TACCCCAGTGGTCAATGGAACGAGCGTTCCCACGGCAAACGACACAAATA
CGGTCAACAGCTCGATGAACTCGTCCGCCTCGCTGCCAAATGGTATTGTT
GCCAATGGCGAATTGGTAAAACACGACAATGCTGTCGCCACAAGAGCCAC
CAGCGTCAGCGTCAACGCCCTCAATGGCAGTTTAGTTAATAGAAACGAAT
ATAACCAGCAGCATTCGC
MXO02193.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8104-PA | 954 | nudE-RA | 1..760 | 9..768 | 3800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudE-RF | 2133 | CG8104-RF | 395..1154 | 9..768 | 3800 | 100 | Plus |
| nudE-RE | 2605 | CG8104-RE | 933..1692 | 9..768 | 3800 | 100 | Plus |
| nudE-RC | 1528 | CG8104-RC | 395..1154 | 9..768 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9900421..9900696 | 241..516 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 9900759..9901012 | 515..768 | 1270 | 100 | Plus |
| 3L | 28110227 | 3L | 9900153..9900306 | 89..242 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9900005..9900086 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:49:49 has no hits.
MXO02193.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:10 Download gff for
MXO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8104-PA | 1..760 | 9..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:31 Download gff for
MXO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RD | 390..1154 | 1..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:20 Download gff for
MXO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RC | 390..1154 | 1..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:20 Download gff for
MXO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9900000..9900084 | 1..88 | 95 | -> | Plus |
| 3L | 9900153..9900306 | 89..242 | 100 | -> | Plus |
| 3L | 9900423..9900696 | 243..516 | 100 | -> | Plus |
| 3L | 9900761..9901012 | 517..768 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:31 Download gff for
MXO02193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9893100..9893184 | 1..88 | 95 | -> | Plus |
| arm_3L | 9893253..9893406 | 89..242 | 100 | -> | Plus |
| arm_3L | 9893523..9893796 | 243..516 | 100 | -> | Plus |
| arm_3L | 9893861..9894112 | 517..768 | 100 | | Plus |
