Clone MXO02194 Report

Search the DGRC for MXO02194

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:94
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptpex16-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02194.3prime Sequence

848 bp (668 high quality bases) assembled on 2007-01-19

> MXO02194.3prime
ATGGTCTAGAAAGCTTGCAGTGGACCACAGATAGAAGTAAGTGCTTTGCC
ACGTGGGAATGTAATCTTTAAGGGGTGTGGCAACCACCTTAGCAATGGGC
ACACTTGTGGCCACAAAGTCGAGGATCCGCTCCAGTCTGGATTTGGTGAA
GCTGTCATAGAACGGCGATCGGACCAGGAAGTACATGATGTTTATGCATC
GCCTGCTCACTCCAGTTTTTGTTGCTTGGACATTAGGTCGCGATGCTGGC
GGTAGAGGTGAATGCTATACAAATCAATGGATAATGCTACCATATATTGC
TTCCAACTTCTCCGGCCGAACAGCCCCATGGCGACCAGGTGGATTAGTGG
CTTCGATATATACAGGTATTCTGCTTGCAGGAGTTTCCTCGGAATTTGCG
TCTTCGCCGCTTCATTGTTGTCTATATGAAGCTTGAAGTCGCGGTATTGC
AGGGGAGGAGCACCCTCCACTTTACGAATCACACGGCCAGATCGCTTCAA
TTGGAAGGTAATGGAGTGCTGGGACTGCAATAAATCGTTCGTGGAGGAGG
CCACACCATCCCCCGAATTCTTCCTCTGTTTGGCCCTTCGATTCAGTGCG
GCGATGGGCGGTGAGGTGATTATATCCGAGGTTGAGTGTTTCAAGACAAA
GAAACGGCCCGCTGCCTTGAAGGCCTGTATTAGCGCTATCACCAGCCACT
TGCCGGATTGACCGAATAGCCCACGGGCTGATATCTCGATGAAAACCTCG
CTATATTCGAGCGTCGTCAACGTGACCTTTAGACGGTAGCAAAGTTTCGA
TTGCAGGTGGATCACCGAATTCTCCTCGGAATTGCGTGCCTTTTCGAT

MXO02194.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3947-PA 1026 CG3947-RA 193..1023 848..19 4015 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Pex16-RA 1439 CG3947-RA 303..1133 848..19 4070 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20777072..20777902 19..848 4045 99.4 Plus
Blast to na_te.dros performed 2014-11-28 19:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 4484..4536 107..54 114 72.7 Minus

MXO02194.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:11 Download gff for MXO02194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3947-PA 193..1026 18..848 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:04 Download gff for MXO02194.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex16-RA 303..1143 9..848 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:30 Download gff for MXO02194.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex16-RA 303..1143 9..848 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:30 Download gff for MXO02194.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20777062..20777902 9..848 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:04 Download gff for MXO02194.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20770162..20771002 9..848 98   Plus

MXO02194.5prime Sequence

802 bp (800 high quality bases) assembled on 2007-01-19

> MXO02194.5prime
CAGTCGACATGGACACTCTGAAGGGCATGCTGAAGGCGTACGAGGCGTGG
GTGGGCAAAAACCCCGACGTGGTGGGGGATTTTGAGACCACAGCCAAGTG
GGTATCCTACTTTATAGCAGGTCGCATTTCCTCATCAAATGTGGTCAGTG
AGCTGGTATATACACTGTCAAACATGCTGGTGTTCTACAACGACCGGATC
ATCGAAAAGGCACGCAATTCCGAGGAGAATTCGGTGATCCACCTGCAATC
GAAACTTTGCTACCGTCTAAAGGTCACGTTGACGACGCTCGAATATAGCG
AGGTTTTCATCGAGATATCAGCCCGTCGGCTTTTCGGTCAATCCGGCAAG
TGGCTGGTGATAGCGCTAATACAGGCCTTCAAGGCAGCGGGCCGTTTCTT
TATCTTGAAACACTCAACCTCGGATATAATCACCTCACCGCCCATCGCCG
CACTGAATCGAAGGGCCAAACAGAGGAAGAATTCGGGGGATGGTGTGGCC
TCCTCCACGAACGATTTATTGCAGTCCCAGCACTCCATTACCTTCCAATT
GAAGCGATCTGGCCGTGTGATTCGTAAAGTGGAGGGTGCTCCTCCCCTGC
AATACCGCGACTTCAAGCTTCATATAGACAACAATGAAGCGGCGAAGACG
CAAATTCCGAGGAAACTCCTGCAAGCAGAATACCTGTATATATCGAAGCC
ACTAATCCACCTGGTCGCCATGGGGCTGTTCGGCCGGAGAAGTTGGAAGC
AATATATGGTAGCATTATCCATTGATTTGTATAGCATTCACCTCTACCGC
CA

MXO02194.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3947-PA 1026 CG3947-RA 1..794 9..802 3970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pex16-RA 1439 CG3947-RA 111..904 9..802 3970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20777301..20777985 802..118 3425 100 Minus
3L 28110227 3L 20778041..20778154 122..9 570 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:29:40 has no hits.

MXO02194.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:11 Download gff for MXO02194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3947-PA 1..793 9..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:28 Download gff for MXO02194.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex16-RA 111..903 9..801 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:18 Download gff for MXO02194.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex16-RA 111..903 9..801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:18 Download gff for MXO02194.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20777302..20777982 121..801 100 <- Minus
3L 20778043..20778154 9..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:28 Download gff for MXO02194.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20770402..20771082 121..801 100 <- Minus
arm_3L 20771143..20771254 9..120 100   Minus