Clone Sequence Records
MXO02195.3prime Sequence
525 bp (525 high quality bases) assembled on 2007-01-19
> MXO02195.3prime
ATGGTCTAGAAAGCTTGCACTGGCCACGGCAATGGCGCAGCTGTGCTGCT
CATTGTTGCTGTTATTGTTATTGCTGGCGCCCGTGTAACTGTTGCTCCCA
TTGTTATTGTTGTTGCATGTGTCTTGGTTGCCATTGTTGCTGCTTAAGCT
ACGCATAAAACTGTCGAGGCTACTAAGCTCGCTGCTCCATAAATTGCTTT
CCGCCTCTGCTTCTGCGGCAGCCTTGGTGGTCGAGGTCGCCACTGCAGAG
TACGCGTCACTGGCGCAGTGCGTTCTGCCGTGGGGCACAAACCGTGTTTG
AATGTCCAGCCAGCGACTGAAGCGCTCCTGCTGCTTTCTACGCAGCTCGT
GCTCTGCGTGGAGCAGGGCCGTCGACAAAATGGCGTTCACGCGTAGGTCG
CTGCCAGCGCCTCTTAGCTTGCGACGCATTTTCTGGCGCTTAACGCGGAA
GTTACGGACCCAGTCGGTTAGGGTCTTGGGGTTCTCGGCTGCGTCGCACT
CGTCGTAGTACGCCACCATGTCGAC
MXO02195.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33229-PA | 504 | CG33229-RA | 1..501 | 519..19 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33229-RB | 1754 | CG33229-RB | 398..903 | 524..19 | 2515 | 99.8 | Minus |
| CG33229-RA | 1500 | CG33229-RA | 144..649 | 524..19 | 2515 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 224249..224754 | 524..19 | 2515 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-28 22:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6837 | 144..44 | 213 | 70.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6824 | 202..40 | 203 | 65.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2419 | 144..33 | 191 | 68.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2512 | 215..44 | 181 | 58.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 152..54 | 172 | 68 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6912 | 144..44 | 161 | 66.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6919 | 221..53 | 158 | 61.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1006..1179 | 231..56 | 145 | 57.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2550 | 150..56 | 136 | 64.6 | Minus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 138..61 | 129 | 62.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1158 | 198..102 | 125 | 58.8 | Minus |
| accord2 | 7650 | accord2 QBERT 7650bp | 4407..4493 | 53..139 | 119 | 65.6 | Plus |
MXO02195.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:11 Download gff for
MXO02195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33229-PA | 1..504 | 18..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:03 Download gff for
MXO02195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33229-RA | 143..654 | 11..525 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:15 Download gff for
MXO02195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33229-RA | 143..654 | 11..525 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:15 Download gff for
MXO02195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 224248..224759 | 11..525 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:03 Download gff for
MXO02195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 224248..224759 | 11..525 | 98 | | Minus |
MXO02195.5prime Sequence
525 bp (525 high quality bases) assembled on 2007-01-19
> MXO02195.5prime
CAGTCGACATGGTGGCGTACTACGACGAGTGCGACGCAGCCGAGAACCCC
AAGACCCTAACCGACTGGGTCCGTAACTTCCGCGTTAAGCGCCAGAAAAT
GCGTCGCAAGCTAAGAGGCGCTGGCAGCGACCTACGCGTGAACGCCATTT
TGTCGACGGCCCTGCTCCACGCAGAGCACGAGCTGCGTAGAAAGCAGCAG
GAGCGCTTCAGTCGCTGGCTGGACATTCAAACACGGTTTGTGCCCCACGG
CAGAACGCACTGCGCCAGTGACGCGTACTCTGCAGTGGCGACCTCGACCA
CCAAGGCTGCCGCAGAAGCAGAGGCGGAAAGCAATTTATGGAGCAGCGAG
CTTAGTAGCCTCGACAGTTTTATGCGTAGCTTAAGCAGCAACAATGGCAA
CCAAGACACATGCAACAACAATAACAATGGGAGCAACAGTTACACGGGCG
CCAGCAATAACAATAACAGCAACAATGAGCAGCACAGCTGCGCCATTGCC
GTGGCCAGTGCAAGCTTTCTAGACC
MXO02195.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33229-PA | 504 | CG33229-RA | 1..501 | 9..509 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33229-RB | 1754 | CG33229-RB | 398..903 | 4..509 | 2515 | 99.8 | Plus |
| CG33229-RA | 1500 | CG33229-RA | 144..649 | 4..509 | 2515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 224249..224754 | 4..509 | 2515 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-28 22:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6837 | 384..484 | 213 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6824 | 326..488 | 203 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2419 | 384..495 | 191 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2512 | 313..484 | 181 | 58.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 376..474 | 172 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6912 | 384..484 | 161 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6919 | 307..475 | 158 | 61.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1006..1179 | 297..472 | 145 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2550 | 378..472 | 136 | 64.6 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 390..467 | 129 | 62.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1158 | 330..426 | 125 | 58.8 | Plus |
| accord2 | 7650 | accord2 QBERT 7650bp | 4407..4493 | 475..389 | 119 | 65.6 | Minus |
MXO02195.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:12 Download gff for
MXO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33229-PA | 1..504 | 9..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:05 Download gff for
MXO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33229-RA | 142..654 | 1..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:17 Download gff for
MXO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33229-RA | 142..654 | 1..517 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:17 Download gff for
MXO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 224247..224759 | 1..517 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:05 Download gff for
MXO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 224247..224759 | 1..517 | 98 | | Plus |
