Clone Sequence Records
MXO02201.5prime Sequence
646 bp (645 high quality bases) assembled on 2007-01-19
> MXO02201.5prime
CAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGTTTCCGAGC
TGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTACTGCCATC
CAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGATATGTACT
GGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTCACTCCGGC
GTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCATTTCCGTT
TACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTTGGGCGATC
AGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACTTTACGTAC
GAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTCCGTGGCGA
CCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGGCTCATTAA
CTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATCGTCTAGCG
CATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCAAAAGAATG
GCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCAAGAGCGCG
AAGACTCCGACAACAGTCCCCTTGCAAGCTTTCTAGACCATTCTTT
MXO02201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-PA | 618 | CG7222-RA | 1..615 | 9..623 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 1395 | CG7222-RB | 107..721 | 9..623 | 3075 | 100 | Plus |
CG7222-RA | 1523 | CG7222-RA | 235..849 | 9..623 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10814282..10814591 | 146..455 | 1550 | 100 | Plus |
2R | 25286936 | 2R | 10814077..10814214 | 9..146 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10814872..10814962 | 454..544 | 455 | 100 | Plus |
2R | 25286936 | 2R | 10815029..10815107 | 545..623 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:43 has no hits.
MXO02201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:13 Download gff for
MXO02201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 9..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:50 Download gff for
MXO02201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 229..849 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:20 Download gff for
MXO02201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 229..849 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:20 Download gff for
MXO02201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10814071..10814214 | 1..146 | 97 | -> | Plus |
2R | 10814283..10814591 | 147..455 | 100 | -> | Plus |
2R | 10814874..10814962 | 456..544 | 100 | -> | Plus |
2R | 10815029..10815107 | 545..623 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:50 Download gff for
MXO02201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6701576..6701719 | 1..146 | 97 | -> | Plus |
arm_2R | 6701788..6702096 | 147..455 | 100 | -> | Plus |
arm_2R | 6702379..6702467 | 456..544 | 100 | -> | Plus |
arm_2R | 6702534..6702612 | 545..623 | 100 | | Plus |
MXO02201.3prime Sequence
639 bp (639 high quality bases) assembled on 2007-01-19
> MXO02201.3prime
ATGGTCTAGAAAGCTTGCAAGGGGACTGTTGTCGGAGTCTTCGCGCTCTT
GGATTGTGGTAATGCTTTGCTGCAAGGCATTCGGTGTCAGCCATTCTTTT
GGCAAACATCTTTGTAGAAATGGCACACAGGAGCTGAAATGCGCTAGACG
ATTGACCCAGCTGGGTATTTCTTGGCCGCAAAGTATCTGAGTTAATGAGC
CCGAGAAGTGGTTGCAATTGTTGTTCATGAGATGATATCGGTCGCCACGG
AACTGATTACCCAGCTCCTCGACGATACGTCGCACCTCCTCGTACGTAAA
GTCGGTGCAGCCGATTTGGATGCTCTGCCGGAACTGGAACTGATCGCCCA
ACTCGTCGTGATCCCTCGGTGAGATCTCGAATACCCCCGTAAACGGAAAT
GGATGTCCGCCGTATGCGAATTCGGTGCCAAAGGCTTCTACGCCGGAGTG
AAATACGCCCAGGCCGATTGAGGTGGTGTACTCGTTGATCCAGTACATAT
CGTAGACATTGAGTATAACAGGCTCGCGAGTACCCATATTGGATGGCAGT
AGCTCTTCATTACCGATCTCGTCTTTTGGTACACTGAGACAGCTCGGAAA
CGACAGATTGCACGGCAATCCGTTGGAGAACATGTCGAC
MXO02201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-PA | 618 | CG7222-RA | 1..615 | 633..19 | 3075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 1395 | CG7222-RB | 107..721 | 633..19 | 3075 | 100 | Minus |
CG7222-RA | 1523 | CG7222-RA | 235..849 | 633..19 | 3075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10814282..10814591 | 496..187 | 1550 | 100 | Minus |
2R | 25286936 | 2R | 10814077..10814214 | 633..496 | 690 | 100 | Minus |
2R | 25286936 | 2R | 10814872..10814962 | 188..98 | 455 | 100 | Minus |
2R | 25286936 | 2R | 10815029..10815107 | 97..19 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:28 has no hits.
MXO02201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:12 Download gff for
MXO02201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 16..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:09 Download gff for
MXO02201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 231..849 | 19..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:33 Download gff for
MXO02201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 231..849 | 19..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:33 Download gff for
MXO02201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10814073..10814214 | 496..639 | 97 | -> | Minus |
2R | 10814283..10814591 | 187..495 | 100 | -> | Minus |
2R | 10814874..10814962 | 98..186 | 100 | -> | Minus |
2R | 10815029..10815107 | 19..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:09 Download gff for
MXO02201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6701578..6701719 | 496..639 | 97 | -> | Minus |
arm_2R | 6701788..6702096 | 187..495 | 100 | -> | Minus |
arm_2R | 6702379..6702467 | 98..186 | 100 | -> | Minus |
arm_2R | 6702534..6702612 | 19..97 | 100 | | Minus |