Clone MXO02201 Report

Search the DGRC for MXO02201

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:1
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptl(3)j2D3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02201.5prime Sequence

646 bp (645 high quality bases) assembled on 2007-01-19

> MXO02201.5prime
CAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGTTTCCGAGC
TGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTACTGCCATC
CAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGATATGTACT
GGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTCACTCCGGC
GTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCATTTCCGTT
TACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTTGGGCGATC
AGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACTTTACGTAC
GAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTCCGTGGCGA
CCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGGCTCATTAA
CTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATCGTCTAGCG
CATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCAAAAGAATG
GCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCAAGAGCGCG
AAGACTCCGACAACAGTCCCCTTGCAAGCTTTCTAGACCATTCTTT

MXO02201.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-PA 618 CG7222-RA 1..615 9..623 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 1395 CG7222-RB 107..721 9..623 3075 100 Plus
CG7222-RA 1523 CG7222-RA 235..849 9..623 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10814282..10814591 146..455 1550 100 Plus
2R 25286936 2R 10814077..10814214 9..146 690 100 Plus
2R 25286936 2R 10814872..10814962 454..544 455 100 Plus
2R 25286936 2R 10815029..10815107 545..623 395 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:19:43 has no hits.

MXO02201.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:13 Download gff for MXO02201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 9..626 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:50 Download gff for MXO02201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 229..849 1..623 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:20 Download gff for MXO02201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 229..849 1..623 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:20 Download gff for MXO02201.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10814071..10814214 1..146 97 -> Plus
2R 10814283..10814591 147..455 100 -> Plus
2R 10814874..10814962 456..544 100 -> Plus
2R 10815029..10815107 545..623 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:50 Download gff for MXO02201.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6701576..6701719 1..146 97 -> Plus
arm_2R 6701788..6702096 147..455 100 -> Plus
arm_2R 6702379..6702467 456..544 100 -> Plus
arm_2R 6702534..6702612 545..623 100   Plus

MXO02201.3prime Sequence

639 bp (639 high quality bases) assembled on 2007-01-19

> MXO02201.3prime
ATGGTCTAGAAAGCTTGCAAGGGGACTGTTGTCGGAGTCTTCGCGCTCTT
GGATTGTGGTAATGCTTTGCTGCAAGGCATTCGGTGTCAGCCATTCTTTT
GGCAAACATCTTTGTAGAAATGGCACACAGGAGCTGAAATGCGCTAGACG
ATTGACCCAGCTGGGTATTTCTTGGCCGCAAAGTATCTGAGTTAATGAGC
CCGAGAAGTGGTTGCAATTGTTGTTCATGAGATGATATCGGTCGCCACGG
AACTGATTACCCAGCTCCTCGACGATACGTCGCACCTCCTCGTACGTAAA
GTCGGTGCAGCCGATTTGGATGCTCTGCCGGAACTGGAACTGATCGCCCA
ACTCGTCGTGATCCCTCGGTGAGATCTCGAATACCCCCGTAAACGGAAAT
GGATGTCCGCCGTATGCGAATTCGGTGCCAAAGGCTTCTACGCCGGAGTG
AAATACGCCCAGGCCGATTGAGGTGGTGTACTCGTTGATCCAGTACATAT
CGTAGACATTGAGTATAACAGGCTCGCGAGTACCCATATTGGATGGCAGT
AGCTCTTCATTACCGATCTCGTCTTTTGGTACACTGAGACAGCTCGGAAA
CGACAGATTGCACGGCAATCCGTTGGAGAACATGTCGAC

MXO02201.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-PA 618 CG7222-RA 1..615 633..19 3075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 1395 CG7222-RB 107..721 633..19 3075 100 Minus
CG7222-RA 1523 CG7222-RA 235..849 633..19 3075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10814282..10814591 496..187 1550 100 Minus
2R 25286936 2R 10814077..10814214 633..496 690 100 Minus
2R 25286936 2R 10814872..10814962 188..98 455 100 Minus
2R 25286936 2R 10815029..10815107 97..19 395 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:52:28 has no hits.

MXO02201.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:12 Download gff for MXO02201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 16..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:09 Download gff for MXO02201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 231..849 19..639 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:33 Download gff for MXO02201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 231..849 19..639 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:33 Download gff for MXO02201.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10814073..10814214 496..639 97 -> Minus
2R 10814283..10814591 187..495 100 -> Minus
2R 10814874..10814962 98..186 100 -> Minus
2R 10815029..10815107 19..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:09 Download gff for MXO02201.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6701578..6701719 496..639 97 -> Minus
arm_2R 6701788..6702096 187..495 100 -> Minus
arm_2R 6702379..6702467 98..186 100 -> Minus
arm_2R 6702534..6702612 19..97 100   Minus