Clone MXO02202 Report

Search the DGRC for MXO02202

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:2
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7747-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02202.3prime Sequence

862 bp (801 high quality bases) assembled on 2007-01-19

> MXO02202.3prime
ATGGTCTAGAAAGCTTGCCCAACTGGAGAAATCTCCAAAACCATTCGCCA
GTTTCTTCTTCTTGGCTGCTTGAGCGGATGTAAGTGGCGCCTCTGGCTTT
TTGGCCACTGTCTGAAGTTTCAGGTACTTGCCTACGCCCTCTCTGTACAC
CTTCAGTGGCTCCTTCATGCGCTTTTGCTGCTCCTCCTTCTTGACAATCT
CCTCCTTGCCGGCCGCCTCCTCCTCGCGCTCCTTGGCCAACTGTTCGGCT
GCCTCGGCAAATGGATTCACAAAGACCTGTGAGGACTCAATGATGATGTC
CTCAATTGGTCTGTCCTTGTTATCCACCTCGATATTTTCCATCTTTTGAA
GAGTGTCTAATCCTCCGACAAGCTTTCCAAAGATGGTGTGTTTGCCGTCG
AGATGTTTGCAAGAGCGATAGGTGATAAAGAACTGAGAGCCATTGGTGTT
GGGTCCCGAATTGGCCATTGATAGCACTCCTCGGCCCGTGTGCGTAAGAT
TCGGCTTAAACTCGTCCTCAAACTTCTTGCCCCAAATGGACTCGCCACCA
GAACCACTTCCAGTGGGATCACCACCTTGCACAATAAAATTCCTTATGGA
CCGGTGAAACATAACATTATTGTAGTAACCATTGGCGCAATGCTTGATGA
AGTTATCGCAGGCTCGAGGAGTTTGATCGCAGAAGAGCTCCAGGTTGAGA
GGGCCAAGGTTCGTATTTAAACGAACGTAGCCCTTCTTTTTTACCCGCTC
GTACTTGACCAAATCATCATCTATGATAGCCGCCTCTATTTGGGAAACGG
GCACCATGGCGGTAGACGTAAAACTGGCCGCCACCGCTCCAGTTGAATAG
TGAGCTGCGTTG

MXO02202.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-PA 1554 CG7747-RA 708..1551 862..19 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-RA 1696 CG7747-RA 804..1647 862..19 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16292313..16292724 19..430 2060 100 Plus
2R 25286936 2R 16292987..16293268 581..862 1410 100 Plus
2R 25286936 2R 16292783..16292934 431..582 760 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:44:42 has no hits.

MXO02202.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:13 Download gff for MXO02202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-PA 708..1554 15..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:43 Download gff for MXO02202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 804..1650 15..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:39 Download gff for MXO02202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 804..1650 15..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:39 Download gff for MXO02202.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16292310..16292724 15..430 99 <- Plus
2R 16292783..16292934 431..582 100 <- Plus
2R 16292989..16293268 583..862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:43 Download gff for MXO02202.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12179815..12180229 15..430 99 <- Plus
arm_2R 12180288..12180439 431..582 100 <- Plus
arm_2R 12180494..12180773 583..862 100   Plus

MXO02202.5prime Sequence

821 bp (787 high quality bases) assembled on 2007-01-19

> MXO02202.5prime
CAGTCGACATGGGTAAAAGGCAGCATCAAAAGGACAAAATGTACCTCACG
TACACGGAGTGGAGTGAGCTGTATGGCGGCAAAAAAGTGGAATCCTTGGA
GAACGACCATGTCAAGTTCAAGCGGCTGCCATTCGAGCACTGCTGCATTA
CGATGGCGCCCTACGAGATGCCCTACTGCGATCTACAGGGCAATGTGTTC
GAGTACGAGGCCATTCTTAAGTTTCTCAAGACCTTTAAGGTGAACCCCAT
CACCGGGCAGAAGATGGACTCCAAGTCATTGGTGAAGCTGAACTTCCACA
GGAATGCAAACGATGAGTACCACTGCCCCGCCTTGTTCAAGCCCTTCAGC
AAGAACTCGCACATCGTGGCGGTGGCCACAACTGGAAATGTATACTGCTG
GGAGGCAATCGACCAGCTGAACATTAAGACAAAGAACTGGAAGGATCTGG
TGGATGACACGCCATTCCAGCGTAAGGATATCATCACAATACAAGATCCT
CAGAAGCTGGAAAAGTACGACATCTCGACCTTCTATCATATTAAGAAGAA
TCTACGAGTCCTGACGGAAGAAGAGCAGCAAGAGAGAAAGAATCCAGCCA
GCGGCCGCATTAAGACCATGAATCTGGAGACCAAGGAGACGCTGGAACAG
CTGCAGCAGGACTATCAGCCAGCGGAAGAGGAGGCCTCCACTTCGAAGCG
TACAGCTGACAAGTTCAACGCAGCTCACTATTCAACTGGAGCGGTGGCGG
CCAGTTTTACGTCTACCGCCATGGTGCCCGTTCCCAATAGAGCGCTATCA
TAATGAGATTGTCAGTACACG

MXO02202.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-PA 1554 CG7747-RA 1..774 9..782 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-RA 1696 CG7747-RA 97..894 9..802 3890 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16293202..16293943 782..41 3710 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:28:49 has no hits.

MXO02202.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:14 Download gff for MXO02202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-PA 1..803 9..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:28 Download gff for MXO02202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 89..899 1..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:19 Download gff for MXO02202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 89..899 1..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:19 Download gff for MXO02202.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16293173..16293943 41..806 99 <- Minus
2R 16294003..16294042 1..40 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:28 Download gff for MXO02202.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12180678..12181448 41..806 99 <- Minus
arm_2R 12181508..12181547 1..40 92   Minus