Clone Sequence Records
MXO02203.3prime Sequence
800 bp (737 high quality bases) assembled on 2007-01-19
> MXO02203.3prime
ATGGTCTAGAAAGCTTGCTTTCTGACCCATACTAAATTGGGTCTCGAACG
AAAGGCGATTCATTCGGCCGTAGACCAACACCTCGCTAATGATCCGTTCG
GCGAAAAGTCGCTGATCCGGACGCATACGCCGGAAGTGGCTGGCCATCCG
TTTTCCGATCAGCTCGCACTCGTACTCGCTGTCGCTTTCATGCTTTCTGT
CTCGCTCCCTATCCCGCTCTCTATGCCAGTCTCTATCTCTATTCGAAGTC
TCCACATTTCTACGCTTTCTCGCCGCTTCAACGTAATCGGTGTCATTGCT
ACTGCGTCTTCGTCGGTTACGGATGCGACGTCCGGATTTATCCGAAGTCT
GCGATTCACCGTTATGCTGCTGGTGCGAAGATACGGTGTGCTGCTGATAG
CCATTGTTCTTAATGCTCCCAGCCGATGAATTGTTACGATAATCATCAAC
ATGATCATCCATGTTATCCAATTCGGGATCGTTATCAGGCTCGGGTTCCG
GTTCAACATCGCCATCACCCACGGCATCAAGACGTAGCATATCCTCTTCG
TGTGGAAAGGCATCAGACATAATGTCAACATCTTCGGTCTCCAATTGCTG
CATATCCTCGGTTATATTCTCATCAACTTCAATTTCTCGCTTCACAATAA
AGCTCATTGATACCTCCTGTTCCGCCAATTGCGCTCCGAATGTTATCGTT
TTATTTGACTCATTCTGCAGGACTTTCGAATTTCGAACCAAATCCCGATC
GGCGGCCACTATGCCCTCCAATTGCAGTTCACCGGTTTCCAGTTCATAGA
MXO02203.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-PB | 1020 | CG4004-RB | 236..1013 | 800..23 | 3890 | 100 | Minus |
| CG4004-PA | 960 | CG4004-RA | 394..953 | 582..23 | 2800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RB | 1395 | CG4004-RB | 293..1074 | 800..19 | 3895 | 99.9 | Minus |
| CG4004-RC | 1288 | CG4004-RC | 404..967 | 582..19 | 2805 | 99.8 | Minus |
| CG4004-RE | 2237 | CG4004-RE | 739..1302 | 582..19 | 2805 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12746869..12747432 | 582..19 | 2805 | 99.8 | Minus |
| X | 23542271 | X | 12745650..12745868 | 800..582 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:30 has no hits.
MXO02203.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:14 Download gff for
MXO02203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-PB | 237..1020 | 15..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:15 Download gff for
MXO02203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 294..1078 | 14..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:42 Download gff for
MXO02203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 294..1078 | 14..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:42 Download gff for
MXO02203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12745651..12745867 | 583..799 | 100 | -> | Minus |
| X | 12746869..12747436 | 14..582 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:15 Download gff for
MXO02203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12639684..12639900 | 583..799 | 100 | -> | Minus |
| arm_X | 12640902..12641469 | 14..582 | 99 | | Minus |
MXO02203.5prime Sequence
854 bp (764 high quality bases) assembled on 2007-01-19
> MXO02203.5prime
CAGTCGACATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGTATCGCGAT
CGCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTGCTACGCAC
GACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGATCAACAATT
TTCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATAGTGGGAAC
ACATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTTCTCTATGA
ACTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGCCGATCGGG
ATTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATAAAACGATA
ACATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGCTTTATTGT
GAAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATATGCAGCAAT
TGGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCACACGAAGAG
GATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAACCGGAACC
CGAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCATGTTGATG
ATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATGGCTATCAG
CAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCGCAGACTTC
GGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAGTAGCAATG
ACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGGAGACTTCG
AATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGAGACAGAAA
GCAT
MXO02203.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-PB | 1020 | CG4004-RB | 1..846 | 9..854 | 4230 | 100 | Plus |
| CG4004-PA | 960 | CG4004-RA | 394..786 | 462..854 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RB | 1395 | CG4004-RB | 58..903 | 9..854 | 4230 | 100 | Plus |
| CG4004-RC | 1288 | CG4004-RC | 404..796 | 462..854 | 1965 | 100 | Plus |
| CG4004-RE | 2237 | CG4004-RE | 739..1131 | 462..854 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12745415..12745868 | 9..462 | 2270 | 100 | Plus |
| X | 23542271 | X | 12746869..12747261 | 462..854 | 1965 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:52 has no hits.
MXO02203.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:15 Download gff for
MXO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-PB | 1..846 | 9..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:33 Download gff for
MXO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 51..903 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:25 Download gff for
MXO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 51..903 | 1..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:25 Download gff for
MXO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12745408..12745867 | 1..461 | 99 | -> | Plus |
| X | 12746869..12747261 | 462..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:33 Download gff for
MXO02203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12639441..12639900 | 1..461 | 99 | -> | Plus |
| arm_X | 12640902..12641294 | 462..854 | 100 | | Plus |
