MXO02205.3prime Sequence
919 bp (787 high quality bases) assembled on 2007-01-19
> MXO02205.3prime
ATGGTCTAGAAAGCTTGCCGCCTCCTTCTTGTGCTTGAACTTGTTCTTGA
GTAGACCGGGCAGCAAGGATGCACAGGCGCAGGCCATCAGGATGCCCATT
GAGGTCCAGGAGAAGGCCTCGCTCGAACTAGTCATCTTCTGGAGCGTCTT
GCCCGCCTGGATGGCGATCACCGAGGGCGGTGCCACGCCGCAGAAGGTGC
CCAATGCGAAGATGTGCAGCGGCACACCGATGACTGGCGATGCCAGGTTG
ATGAACCAGTTAGGCAGGATCGGTGTCATGCGCAGGAATAGCATATAGTT
GAACAAACTGTCCCGGTACTCCTCGACATGCTTCGACCACTCGCTGGTCT
TCTTCGGCCAGAAGTGACGAATCAGACGACGTCCGACCAGATTGGAAAGT
GTATAGCATAGGGTAGCGCCCAGCGCCGAACAGAAACATATGAGGAACAG
GGCGATCGGGAACTTGTACAGGAATCCCAGCAGAATCGAGAGGAACAGCG
ATCCGGGAATGGCGAATGTTTGCAGGAATACGTAGGCGACCACGACGCCA
AACATCACTTCGAAGTAGTACATGTCCTTGTAGCGATCAAGGACCTTGGC
TAGCATCTTAGCATCTTGGATATCACGCGGAATTTTCAAGTGTTGTTTCT
CCGACGCGTTGAGCTCGGGGAATATGGCGTACACATAGCACATGGTGACC
AAGCTGGCCACAAAAATGCCCGCTACGATGACCAGGGACTTCTTGGTGGC
CTTCTTCTCGTCTGCGGACATGGCCTGCTTTTGCGGAGTGGCCTGTTGTT
GTTGCTGCTGCTGCTGTTGTTGCTGTGGATTAAGATCTTGTTGCTCCTGT
GGCGGCACCTGTGGCAACAGTGGAGTAGCCACCTGATTCCGGGGAGTGTT
CCTGGAGCGCCTTTGCCCT
MXO02205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8408-PA | 963 | CG8408-RA | 61..960 | 919..19 | 4465 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stas-RA | 1882 | CG8408-RA | 506..1405 | 919..19 | 4480 | 99.9 | Minus |
| stas-RB | 2163 | CG8408-RB | 506..897 | 919..527 | 1940 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17623698..17624205 | 19..526 | 2540 | 100 | Plus |
| X | 23542271 | X | 17626938..17627202 | 654..919 | 1280 | 99.6 | Plus |
| X | 23542271 | X | 17625530..17625658 | 527..655 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:38 has no hits.
MXO02205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:16 Download gff for
MXO02205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8408-PA | 61..963 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:17 Download gff for
MXO02205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stas-RA | 506..1411 | 12..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:46 Download gff for
MXO02205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stas-RA | 506..1411 | 12..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:46 Download gff for
MXO02205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17623692..17624205 | 12..526 | 99 | <- | Plus |
| X | 17625530..17625658 | 527..655 | 100 | <- | Plus |
| X | 17626940..17627202 | 656..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:17 Download gff for
MXO02205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17517725..17518238 | 12..526 | 99 | <- | Plus |
| arm_X | 17519563..17519691 | 527..655 | 100 | <- | Plus |
| arm_X | 17520973..17521235 | 656..919 | 99 | | Plus |
MXO02205.5prime Sequence
846 bp (689 high quality bases) assembled on 2007-01-19
> MXO02205.5prime
CAGTCGACATGTCTTACTGCAGTGGTGTGGCCATTTCCGCTGACGAGGGG
ATTACAATGCGCAATGGCAGGGCAAAGGCGCTCCAGGAACACTCCCCGGA
TCAGGTGGCTACTCCACTGTTGCCACAGGTGCCGCCACAGGAGCAACAAG
ATCTTAATCCACAGCAACAACAGCAGCAGCAGCAACAACAACAGGCCACT
CCGCAAAAGCAGGCCATGTCCGCAGACGAGAAGAAGGCCACCAAGAAGTC
CCTGGTCATCGTAGCGGGCATTTTTGTGGCCAGCTTGGTCACCATGTGCT
ATGTGTACGCCATATTCCCCGAGCTCAACGCGTCGGAGAAACAACACTTG
AAAATTCCGCGTGATATCCAAGATGCTAAGATGCTAGCCAAGGTCCTTGA
TCGCTACAAGGACATGTACTACTTCGAAGTGATGTTTGGCGTCGTGGTCG
CCTACGTATTCCTGCAAACATTCGCCATTCCCGGATCGCTGTTCCTCTCG
ATTCTGCTGGGATTCCTGTACAAGTTCCCGATCGCCCTGTTCCTCATATG
TTTCTGTTCGGCGCTGGGCGCTACCCTATGCTATACACTTTCCAATCTGG
TCGGACGTCGTCTGATTCGTCACTTCTGGCCGAAGAAGACCAGCGAGTGG
TCGAAGCATGTCGAGGAGTACCGGGACAGTTTGTTCAACTATGTGCTATT
CCTGCGCATGACACCGATCCTGCCTAACTGGTTCATCAACCTGGCATCGC
CAGTCATCGGTGTGCCGCTGCACATCTTCGCATTGGGCACCTTCTGCGGC
GTGGCACCGCCCTCGGTGATCGCCATCCAGGCGGGCAAGACGCTCC
MXO02205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8408-PA | 963 | CG8408-RA | 1..838 | 9..846 | 4165 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stas-RA | 1882 | CG8408-RA | 446..1283 | 9..846 | 4175 | 99.9 | Plus |
| stas-RB | 2163 | CG8408-RB | 446..897 | 9..460 | 2260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17623820..17624205 | 846..461 | 1915 | 99.7 | Minus |
| X | 23542271 | X | 17626938..17627241 | 333..30 | 1520 | 100 | Minus |
| X | 23542271 | X | 17625530..17625658 | 460..332 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:39 has no hits.
MXO02205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:16 Download gff for
MXO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8408-PA | 1..838 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:40 Download gff for
MXO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stas-RA | 438..1283 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:57 Download gff for
MXO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stas-RA | 438..1283 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:57 Download gff for
MXO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17623820..17624205 | 461..846 | 99 | <- | Minus |
| X | 17625530..17625658 | 332..460 | 100 | <- | Minus |
| X | 17626940..17627240 | 31..331 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:40 Download gff for
MXO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17517853..17518238 | 461..846 | 99 | <- | Minus |
| arm_X | 17519563..17519691 | 332..460 | 100 | <- | Minus |
| arm_X | 17520973..17521273 | 31..331 | 100 | <- | Minus |
