Clone Sequence Records
MXO02207.3prime Sequence
588 bp (533 high quality bases) assembled on 2007-01-19
> MXO02207.3prime
ATGGTCTAGAAAGCTTGCGTCATCCAGATCTATATCGGAGTCATCCGAGT
CGTAGCCTCCACGTATTGTCTTCTGTGGGCGGTTGATGAATGGTTTGCGT
TTCACATCTGGTGGCTGCATCAGATCGCCCTTGTAGTCAATGGCCCCCGA
GTGGGCGATGCGCCACTCCAGCATTTCGGTGGCGAAGTCGTCGCAGTTGC
CCAGATCGGTGAATCCGACAATGAAGTCCTTGGTCTTGCTGTCCTTCACC
AGGGCGATGGTGGGTATCACCTTGATGCGCAGTCGCTGGGTGAGGAATGG
AGTCTTTTCGGCATTCACCTTGCAAAACTTGGCCTCCACGTGCTTGGCCG
CGAGGATCTTCAGGTGCATGTCCACGATCTTGCAGCGCTCGGCGCTGTCG
CGGTAAAATTGGCAAACAATGTTGGGCGACTTTTTCGACATCTCGAAGAA
CTCTTTTTCGTCGGCCAGCTCGGTGTAGGTGCCATGACCGTTTCTGAGCC
ACTCCTGCTTCTTGTTGTTCAGGTCCTTCATTTCGCGGAGCCGCTGCTCC
CGCAGGACCTTTAGGTCATCCGAATCGAGGTTGTCCAG
MXO02207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4511-PA | 651 | CG4511-RA | 79..648 | 588..19 | 2800 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4511-RB | 1407 | CG4511-RB | 190..759 | 588..19 | 2820 | 99.6 | Minus |
| CG4511-RA | 1452 | CG4511-RA | 235..804 | 588..19 | 2820 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10855294..10855764 | 489..19 | 2325 | 99.6 | Minus |
| 3R | 32079331 | 3R | 10854934..10855033 | 588..489 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:49 has no hits.
MXO02207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:17 Download gff for
MXO02207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4511-PA | 79..651 | 15..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:34 Download gff for
MXO02207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4511-RA | 235..809 | 12..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:44 Download gff for
MXO02207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4511-RA | 235..809 | 12..588 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:44 Download gff for
MXO02207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10854934..10855032 | 490..588 | 100 | -> | Minus |
| 3R | 10855294..10855769 | 12..489 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:34 Download gff for
MXO02207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6680656..6680754 | 490..588 | 100 | -> | Minus |
| arm_3R | 6681016..6681491 | 12..489 | 98 | | Minus |
MXO02207.5prime Sequence
623 bp (621 high quality bases) assembled on 2007-01-19
> MXO02207.5prime
CAGTCGACATGGCCAACATCCTGGAGAACCAACTGTTCACGGCCGCCAAG
ACCATCGAGCAGCAGCTGGACCAGCAGCTCGACCGCCTGGACAACCTCGA
TTCGGATGACCTAAAGGTCCTGCGGGAGCAGCGGCTCCGCGAAATGAAGG
ACCTGAACAACAAGAAGCAGGAGTGGCTCAGAAACGGTCATGGCACCTAC
ACCGAGCTGGCCGACGAAAAAGAGTTCTTCGAGATGTCGAAAAAGTCGCC
CAACATTGTTTGCCACTTTTACCGCGACAGCACCGAGCGCTGCAAGATCG
TGGACATGCACCTGAAGATCCTCGCGGCCAAGCACGTGGAGGCCAAGTTT
TGCAAGGTGAATGCCGAAAAGACTCCATTCCTCACCCAGCGACTGCGCAT
CAAGGTGATACCCACCATCGCCCTGGTGAAGGACAGCAAGACCAAGGACT
TCATTGTCGGATTCACCGATCTGGGCAACTGCGACGACTTCGCCACCGAA
ATGCTGGAGTGGCGCATCGCCCACTCGGGGGCCATTGACTACAAGGGCGA
TCTGATGCAGCCACCAGATGTGAAACGCAAACCATTCATCAACCGCCCAC
AGAAGACAATACGTGGAGGTCAT
MXO02207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4511-PA | 651 | CG4511-RA | 1..611 | 9..619 | 3055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4511-RB | 1407 | CG4511-RB | 110..722 | 7..619 | 3065 | 100 | Plus |
| CG4511-RA | 1452 | CG4511-RA | 155..767 | 7..619 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10855294..10855727 | 186..619 | 2170 | 100 | Plus |
| 3R | 32079331 | 3R | 10854854..10855033 | 7..186 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:42 has no hits.
MXO02207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:18 Download gff for
MXO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4511-PA | 1..613 | 9..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:06 Download gff for
MXO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4511-RA | 148..769 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:19 Download gff for
MXO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4511-RA | 148..769 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:19 Download gff for
MXO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10854847..10855032 | 1..185 | 97 | -> | Plus |
| 3R | 10855294..10855729 | 186..623 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:06 Download gff for
MXO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6680569..6680754 | 1..185 | 97 | -> | Plus |
| arm_3R | 6681016..6681451 | 186..623 | 99 | | Plus |
