Clone MXO02208 Report

Search the DGRC for MXO02208

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:8
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG33713-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02208.3prime Sequence

649 bp (616 high quality bases) assembled on 2007-01-19

> MXO02208.3prime
ATGGTCTAGAAAGCTTGCGGACGCGGATCCAGCGAGTCGTTCCCGTTCCG
TTTGAAGCACCTGGCAGATCTGCTCATCGTCAGCCACGTCGTAACAAGTC
TGTCCATCTGAATCGCGTAGCTCCAGGCTGGCGTGTAGCTCCAACAGGCA
TTGGAGCGCCTCCAAGTGTCCACAACTGGCGGCGTAGTGCAGCGGAGTCT
GTTGCTCCGCATCTCGCTGATTTACACTGGCCCCACTCCGCACCAGGAAC
TGTATGATTTCGACGGCATTGCGATCGGTAGCCCAGTGGATGAGCGCCAT
GCCATGCTCGTCCAGCTTAACCAAGTCACTTGGCTGCAGCAGTTCCCTCA
GCCTGTCTAGATTGTTCTCCTTCACGTGGTCAAACAGGGTCTTTTCACTG
TCCAAACGTTGGTCCTCCAGTGGGACCGACTCAATGGAATGAACGACCCA
GCCTGGGTTGCGCCGGGACCGCCAGTTGGGTTGAAGCTCCTGCAGCTTCT
GGACGTAGGCCTGCCGGGCAGCGGACTGGGACATTGTTCCCAGATTGCGC
CAAGCCTGCCACTTGCTCTTGGCCTGCAGTTGAAGCAGACCCGGACTTTG
CTCCTTGCAGGGGCCATTCTGGCTGCTTGTATATCGAAATATAAAGGCC

MXO02208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33713-PA 732 CG33713-RA 129..729 619..19 3005 100 Minus
CG33713-PB 732 CG33713-RB 129..729 619..19 3005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33714-RB 1279 CG33714-RB 534..1148 631..19 3025 99.7 Minus
CG33714-RA 1278 CG33714-RA 533..1147 631..19 3025 99.7 Minus
CG33713-RB 1278 CG33713-RB 533..1147 631..19 3025 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21318067..21318667 19..619 3005 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:28:57 has no hits.

MXO02208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:18 Download gff for MXO02208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-PB 104..732 15..639 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:34 Download gff for MXO02208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 522..1150 15..639 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:22 Download gff for MXO02208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 522..1150 15..639 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:22 Download gff for MXO02208.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21318064..21318691 15..639 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:34 Download gff for MXO02208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21189091..21189718 15..639 98   Plus

MXO02208.5prime Sequence

753 bp (684 high quality bases) assembled on 2007-01-19

> MXO02208.5prime
CAGTCGACATGTCGGACAGCGATACGGACACCGTGGACGAGCTTTTCCAC
CTTGCCACCGAGCATGTGGCCAAGCAGTCAAACAGCATTGGTTCCGCGGA
CCTTTTAATATTTTACGGATACTACAAGCAGGCCACGAATGGCCCCTGCA
AGGAGCAAAGTCCGGGTCTGCTTCAACTGCAGGCCAAGAGCAAGTGGCAG
GCTTGGCGCAATCTGGGAACAATGTCCCAGTCCGCTGCCCGGCAGGCCTA
CGTCCAGAAGCTGCAGGAGCTTCAACCCAACTGGCGGTCCCGGCGCAACC
CAGGCTGGGTCGTTCATTCCATTGAGTCGGTCCCACTGGAGGACCAACGT
TTGGACAGTGAAAAGACCCTGTTTGACCACGTGAAGGAGAACAATCTAGA
CAGGCTGAGGGAACTGCTGCAGCCAAGTGACTTGGTTAAGCTGGACGAGC
ATGGCATGGCGCTCATCCACTGGGCTACCGATCGCAATGCCGTCGAAATC
ATACAGTTCCTGGTGCGGAGTGGGGCCAGTGTAAATCAGCGAGATGCGGA
GCAACAGACTCCGCTGCACTACGCCGCCAGTTGTGGACACTTGGAGGCGC
TCCAATGCCTGTTGGAGCTACACGCCAGCCTGGAGCTACGCGATTCAGAT
GGACAGACTTGTTACGACGTGGCTGACGATGAGCAGATGTGCCAGGTGCT
TCAAACGGAACGGGAACGACTCGCTGGATCCGCGTCCGCAAGCTTTCTAG
ACC

MXO02208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33713-PA 732 CG33713-RA 1..729 9..737 3620 99.8 Plus
CG33713-PB 732 CG33713-RB 1..729 9..737 3620 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33714-RB 1279 CG33714-RB 417..1148 6..737 3645 99.9 Plus
CG33714-RA 1278 CG33714-RA 416..1147 6..737 3645 99.9 Plus
CG33713-RB 1278 CG33713-RB 416..1147 6..737 3645 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21318067..21318798 737..6 3645 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 20:30:02 has no hits.

MXO02208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:19 Download gff for MXO02208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-PB 1..732 9..741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:36 Download gff for MXO02208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 411..1150 1..741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:34 Download gff for MXO02208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 411..1150 1..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:34 Download gff for MXO02208.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21318064..21318799 1..741 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:36 Download gff for MXO02208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21189091..21189826 1..741 99   Minus