MXO02210.3prime Sequence
843 bp (739 high quality bases) assembled on 2007-01-19
> MXO02210.3prime
ATGGTCTAGAAAGCTTGCATCAAGCAAACTCTTCACATAGGCGGCGTCCT
CCTGGACGAATTTTTCTGACTGCTCTGCAGGCACTTCCACTTCGGTTTTA
TAGTTGTCCAGGCCAATCTCTTCCTCTTTCTTGATCAGAATGTCCACCAC
GTTCTCGCAGGCCAGCAGACAGTCGCTGTCCTTGCCCACCTTGGCCTCCC
ACTTGTGGTACTCCCGCAGGATCTCATAGACGCCCCTGGAGCGCAGGATT
TCCCGGCTGCGACGTGTGGAGCACAGTTGCAGCAAACACTCCAGCAGCAT
TTTCCGCAAATCGGGATCCTCTTCGCGCGTTTTACTTTCAGGCAGGTACT
GCAGTTCGATGGGCAACAATTCATTGTCCTCGTCGCTGAACTCTTCTGGA
CCGCACAGTGGCTGCAGGATTGCCACCAGAATACTGCTCTGCTCGTTTAG
GATCACATCGTGGTAGACAGTGTCGAAGCAAACGTTCTTCAGAATGCCAA
TGGTGCCGCCACGCCGCACTACACTTCCCTCGAATGAGGCAAAGGGCAGT
AGTTTCTCCAGCAACTCGTATTTCCGATGGCAGCACAGTTCCCTGCCCCG
AGAAACCTGGGTCAGATTGCAGAAGATGGGCGCCAGATAATGCAGCTTGG
CCTTCTTTTTGTTGTAGTCCAATTGCGCGAAGGCCTTTGCCAAGCGGGGT
AGCGTGTGATCGTCTCTTTCTAGCGTGTCCAGGATCTCGTGGACCAGAGA
TTCCACTCGCGTTAGGTTGCTCAAGACCATGCTCCAGGGATCAGCCAGAT
CGGATTGCTCGTTGGTTATTTCCTTGGCAGCCACTTCTACGAT
MXO02210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6073-PA | 1110 | CG6073-RA | 283..1107 | 843..19 | 4050 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6073-RB | 1275 | CG6073-RB | 373..1197 | 843..19 | 4080 | 99.6 | Minus |
| CG6073-RA | 1564 | CG6073-RA | 373..1197 | 843..19 | 4080 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26187771..26188265 | 349..843 | 2445 | 99.6 | Plus |
| 3R | 32079331 | 3R | 26187385..26187717 | 19..351 | 1650 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:03 has no hits.
MXO02210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:20 Download gff for
MXO02210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6073-PA | 283..1110 | 16..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:56 Download gff for
MXO02210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6073-RA | 373..1201 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:47 Download gff for
MXO02210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6073-RA | 373..1201 | 15..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:47 Download gff for
MXO02210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26187381..26187714 | 15..348 | 99 | <- | Plus |
| 3R | 26187771..26188265 | 349..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:56 Download gff for
MXO02210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22013103..22013436 | 15..348 | 99 | <- | Plus |
| arm_3R | 22013493..22013987 | 349..843 | 99 | | Plus |
MXO02210.5prime Sequence
227 bp (108 high quality bases) assembled on 2007-01-19
> MXO02210.5prime
CAGTCGACATGGAGACTGTGAAGGAACTGGTTCAATTCATGCAACCGAAT
CAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTAGGATTGAC
TGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGAAATGCTAA
TGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGGCCAAAGAT
GCGGTTTTAAGCCTAATAAATTTAACG
MXO02210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6073-PA | 1110 | CG6073-RA | 1..219 | 9..227 | 1070 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6073-RB | 1275 | CG6073-RB | 91..309 | 9..227 | 1080 | 99.5 | Plus |
| CG6073-RA | 1564 | CG6073-RA | 91..309 | 9..227 | 1080 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26188386..26188521 | 227..92 | 665 | 99.3 | Minus |
| 3R | 32079331 | 3R | 26188632..26188717 | 94..9 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:38 has no hits.
MXO02210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:20 Download gff for
MXO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6073-PA | 1..219 | 9..227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:14 Download gff for
MXO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6073-RA | 91..309 | 9..227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:37 Download gff for
MXO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6073-RA | 91..309 | 9..227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:37 Download gff for
MXO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26188386..26188519 | 94..227 | 99 | <- | Minus |
| 3R | 26188633..26188717 | 9..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:14 Download gff for
MXO02210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22014108..22014241 | 94..227 | 99 | <- | Minus |
| arm_3R | 22014355..22014439 | 9..93 | 100 | | Minus |
