MXO02211.3prime Sequence
849 bp (792 high quality bases) assembled on 2007-01-19
> MXO02211.3prime
ATGGTCTAGAAAGCTTGCGGTACCGGGCACCTTGCACAGGGTGGCATCAA
TCTTCTGCAGCTGCGGCAGTATGTCGCGCAGTTTGGAGCGGTAGCGAACA
TCCTTGGCCAGCGGATTGTACTCCAGGTAGATGGTCTGCAGCGCCTTGTT
CACCTTCAACAGCTCAATGTCCTTCCAGTCATCGACTCCGTTGTGGTTCA
GCCACAGCTCCTCGAGCAGTTCCAGCTTTTCCAGATTGGCAATGCCCTTC
AACCGGTTCTTGGCCAAGTCGAGGGTCTCCAATTTGGTGTTCTCCGAGAG
GTTTTCAATGGTTTCCACTCCGTTTTCCGAAACGTAGAGTTCGCGGAGGT
TGGCAAGCTTTTCAAGGTTCTCGATTTTTACAATGCGATTGGCCTGTAGA
CTGAGTATCTCCAAATTGACCAATGTGTCCAAGTTCTCGATCTTTGCTAT
CTTATTTTTGCCCAGGAAGAGCTGTCGTAGATTCACGAGCATTTCGATGT
TTTCGATCTTCTTCAGTTTGTTATCCCCCAGCTCTAGCATGGTCAGATTG
GTGAGCATGTCCAGGTTCTCGATTTGGGTTATCCGGTTCGACACAAAGTA
GACCTTCTCCAGCTTGACCAGCTTGTCAAGGTTCTCTATCTTCGTCAGAC
GATTGAAGCTAATGTCCAGCACCTCCAGGTGGGGCAAGTCGTCCAAATTC
TCAATCTTGGTGATCTGGTTGTCATACAGCTCCAGCTCAATCAGTGTTTT
CAGGCTGGACAAGTTCTCGATTTTCTTGATCAGATTCCAGCGCAGAAACA
GGCGCTCGATTCGAGTCAGCGGCTCGAAGTTCTCCAGCTTCTCGATCCG
MXO02211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5851-PA | 981 | sds22-RA | 148..978 | 849..19 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 1354 | CG5851-RA | 410..1240 | 849..19 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17392076..17392906 | 849..19 | 4155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:51 has no hits.
MXO02211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:21 Download gff for
MXO02211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5851-PA | 148..981 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:11 Download gff for
MXO02211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 410..1240 | 19..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:22 Download gff for
MXO02211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 410..1240 | 19..849 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:22 Download gff for
MXO02211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17392076..17392906 | 19..849 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:11 Download gff for
MXO02211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13217798..13218628 | 19..849 | 100 | | Minus |
MXO02211.5prime Sequence
744 bp (688 high quality bases) assembled on 2007-01-19
> MXO02211.5prime
CAGTCGACATGGGCGATGCTGATCGTGCGATGAACGAACCAGAAGCCGCG
AAAACTGTGTCCGGAATCCAGGTGATTCCCGCCGAGGATGTGGCTTCCAT
TGAGGATATAATCACAATCGATCCGGACTGCTACGAGCTTGATCTGAATC
ATCGCCGGATCGAGAAGCTGGAGAACTTCGAGCCGCTGACTCGAATCGAG
CGCCTGTTTCTGCGCTGGAATCTGATCAAGAAAATCGAGAACTTGTCCAG
CCTGAAAACACTGATTGAGCTGGAGCTGTATGACAACCAGATCACCAAGA
TTGAGAATTTGGACGACTTGCCCCACCTGGAGGTGCTGGACATTAGCTTC
AATCGTCTGACGAAGATAGAGAACCTTGACAAGCTGGTCAAGCTGGAGAA
GGTCTACTTTGTGTCGAACCGGATAACCCAAATCGAGAACCTGGACATGC
TCACCAATCTGACCATGCTAGAGCTGGGGGATAACAAACTGAAGAAGATC
GAAAACATCGAAATGCTCGTGAATCTACGACAGCTCTTCCTGGGCAAAAA
TAAGATAGCAAAGATCGAGAACTTGGACACATTGGTCAATTTGGAGATAC
TCAGTCTACAGGCCAATCGCATTGTAAAAATCGAGAACCTTGAAAAGCTT
GCCAACCTCCGCGAACTCTACGTTTCGGAAAACGGAGTGGAAACCATTGA
AAACCTCTCGGAGAACACCAAATTGGAGACCCTCGACTTGGCCA
MXO02211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5851-PA | 981 | sds22-RA | 1..736 | 9..744 | 3680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 1354 | CG5851-RA | 262..998 | 8..744 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17391928..17392664 | 8..744 | 3685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:46 has no hits.
MXO02211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:21 Download gff for
MXO02211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5851-PA | 1..735 | 9..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:43 Download gff for
MXO02211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 258..997 | 1..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:04 Download gff for
MXO02211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 258..997 | 1..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:04 Download gff for
MXO02211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17391924..17392663 | 1..743 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:43 Download gff for
MXO02211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13217646..13218385 | 1..743 | 99 | | Plus |
