Clone Sequence Records
MXO02216.3prime Sequence
782 bp (746 high quality bases) assembled on 2007-01-19
> MXO02216.3prime
ATGGTCTAGAAAGCTTGCGCGTCTTATGGAGATAATCTGGACGGCGGCGG
TGTGATCGCGACAAAAGTGGCTGGCACAGGCCGATACGTTCGCACATGGA
GTCACCTTGTAGCCACTGTCACCCAGCTGGGTCATGAACTTGTGCAGCGT
GTCCACATTCCGCACCGTGCTGGCCAGCAGGGTTTCCAGTCCACCTCCGC
GTCGGGAGTACAAATAGTCCATGGCACCCAGCAGTGCATCGAACTGGGAA
TCATCGTAGATCACATCGGCGGCTATCAAAAGATCCGTTTTAGCATGCGA
ATCCCAGGGGAACTCACTGACCGCAGCCCAGTTTAGCTGCTCCGCCTGGG
GCATCTGCTCCTTGGGCGTGTCTGGAAAATTCAGGCTGATATTCTCGCGC
ATTAGCTGGACGCAGGGTTCACTGCCATCGGTCAGCAGGACCTGGCCCAC
TTGCAGCTGCAGGGCCGGTAGTTTCAGCATGATTCCCAGCAGCCCGGCAC
CGGCTCCCAACTCCACTATGTTCTTGCCACGCACCAGGTCGCGGTGCTGC
AGGAGGTAATCGCCGAGGGCCAGAGCCGCTTCCCAGGTGCACAATCCCGT
TGTGCCCTCGGCCACGAAGCTGGTGGACTCACGGAGCGTGATGTGGGCGC
CCGGTTCGAGGAGATAATGTTTGTAGGCGTACGTGGATGACCCTGTGCTC
GCTTCGTTCTCCGCCACCGGACCGCACAAGCTGCTGTATATATCGTCGTG
CAGATCTTCCTGATCTCCGAGCAGGAGTAGCA
MXO02216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7889-PA | 960 | CG7889-RA | 194..957 | 782..19 | 3820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7889-RA | 1468 | CG7889-RA | 303..1066 | 782..19 | 3820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19243998..19244661 | 782..119 | 3320 | 100 | Minus |
| X | 23542271 | X | 19244718..19244822 | 123..19 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:50:10 has no hits.
MXO02216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:24 Download gff for
MXO02216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7889-PA | 195..960 | 18..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:44 Download gff for
MXO02216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7889-RA | 304..1072 | 10..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:30 Download gff for
MXO02216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7889-RA | 304..1072 | 10..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:30 Download gff for
MXO02216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19244719..19244828 | 10..122 | 96 | | Minus |
| X | 19243999..19244657 | 123..781 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:44 Download gff for
MXO02216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19138032..19138690 | 123..781 | 100 | -> | Minus |
| arm_X | 19138752..19138861 | 10..122 | 96 | | Minus |
MXO02216.5prime Sequence
792 bp (737 high quality bases) assembled on 2007-01-19
> MXO02216.5prime
CAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGTTCCTCTGT
TGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTGCCCCTCAG
CTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCACCCGATGA
ACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCCTCAAGCAC
CTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGATATATACAG
CAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGGGTCATCCA
CGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACATCACGCTC
CGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTGTGCACCTG
GGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCGCGACCTGG
TGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGCTGCTGGGA
ATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAGGTCCTGCT
GACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAATATCAGCC
TGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGGAGCAGCTA
AACTGGGCTGCGGTCAGTGAGTTCCCCTGGGATTCGCATGCTAAAACGGA
TCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAAGTCGATGCAC
TGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGAAGGTG
MXO02216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7889-PA | 960 | CG7889-RA | 1..784 | 9..792 | 3845 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7889-RA | 1468 | CG7889-RA | 110..893 | 9..792 | 3875 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19243876..19244588 | 80..792 | 3520 | 99.6 | Plus |
| X | 23542271 | X | 19243740..19243811 | 9..80 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:09 has no hits.
MXO02216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:24 Download gff for
MXO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7889-PA | 1..784 | 9..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:59 Download gff for
MXO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7889-RA | 110..893 | 9..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:51 Download gff for
MXO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7889-RA | 110..893 | 9..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:51 Download gff for
MXO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19243740..19243811 | 9..80 | 100 | -> | Plus |
| X | 19243877..19244588 | 81..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:59 Download gff for
MXO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19137773..19137844 | 9..80 | 100 | -> | Plus |
| arm_X | 19137910..19138621 | 81..792 | 99 | | Plus |
