MXO02217.3prime Sequence
770 bp (696 high quality bases) assembled on 2007-01-19
> MXO02217.3prime
ATGGTCTAGAAAGCTTGCCAAGCTCCGTATGGACTTCCAGCGTCGCAGCA
ACAAACACGACGAGGTCAGACCACTGGAATATTGGCTAAATTCACTTATA
TTTATGTTGCGTGTTGGAATGTCGATTTTCTCTTTTAAAGTCTTGTAGGC
TTCTGGAATTTCCGTTGGGGATCTGTGCACGATCGTTCCATTGATGTACA
GCATATTGGCCGCACTCTCCTCGGGCAGAGTCAACTTCTGGTAGGTGCAG
ATGGCCTCGCGCTCCATCCGCTTGACGATCTCCTGGCAGGTGGGGCTACT
GCTCACACACAGCACTTCCGGCCCCGCCATGGTCACATAGTACTTCAGCC
TCTTGGTGCCGTTGACCCGAATCGGCGTCACTGGATATTCGGGATAGGCC
ATGGCCACCGCCCGGGCTCCCTCCTCATTGGTGAAACTGGAGATGCCAAC
GAAGAATTCGCGACCCGTGAAAAGCACATCGCCACCATCGAGCTGAGCGT
TCGGATCCTCGATCTCGATGACCGGAATGTCCAGCTCCTTTTTGAGAATA
ATGGCCATGCTCTCGGCCTCGAGTTGCCGCTTGGGATGCTCCGATCTTCC
GATCAGGGCCACTCCGTTACAGATCACCGCACTGTTCTCGACAAATACGC
CCTCGGGCAGCTGGTCATCCGGCGGCAGCTCGATCACATCGAGACCAATG
GTCCTCAGGAGGGTGCAGTACTGCTCGTGCTGCTGCTTGGCCAGCTGTAC
GTCGAACTTTCCGTTCTCCA
MXO02217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-PA | 807 | CG1764-RA | 53..804 | 770..19 | 3735 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-RA | 1395 | CG1764-RA | 157..908 | 770..19 | 3745 | 99.9 | Minus |
CG1764-RB | 1780 | CG1764-RB | 528..1279 | 770..19 | 3745 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13295687..13295994 | 463..770 | 1540 | 100 | Plus |
X | 23542271 | X | 13295158..13295383 | 142..367 | 1130 | 100 | Plus |
X | 23542271 | X | 13294974..13295098 | 19..143 | 610 | 99.2 | Plus |
X | 23542271 | X | 13295525..13295625 | 365..465 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:20 has no hits.
MXO02217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:24 Download gff for
MXO02217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-PA | 54..807 | 16..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:06 Download gff for
MXO02217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 529..1290 | 8..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:58 Download gff for
MXO02217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 529..1290 | 8..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:58 Download gff for
MXO02217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13294963..13295096 | 8..141 | 96 | <- | Plus |
X | 13295158..13295382 | 142..366 | 100 | <- | Plus |
X | 13295527..13295624 | 367..464 | 100 | <- | Plus |
X | 13295689..13295993 | 465..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:06 Download gff for
MXO02217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13189560..13189657 | 367..464 | 100 | <- | Plus |
arm_X | 13188996..13189129 | 8..141 | 96 | <- | Plus |
arm_X | 13189191..13189415 | 142..366 | 100 | <- | Plus |
arm_X | 13189722..13190026 | 465..769 | 100 | | Plus |
MXO02217.5prime Sequence
795 bp (698 high quality bases) assembled on 2007-01-19
> MXO02217.5prime
CAGTCGACATGTCGCCCAAGTACACACATGCGATTGTGGCCAGAATCTCG
GATGCCCTGCTGGAGAACGGAAAGTTCGACGTACAGCTGGCCAAGCAGCA
GCACGAGCAGTACTGCACCCTCCTGAGGACCATTGGTCTCGATGTGATCG
AGCTGCCGCCGGATGACCAGCTGCCCGAGGGCGTATTTGTCGAGAACAGT
GCGGTGATCTGTAACGGAGTGGCCCTGATCGGAAGATCGGAGCATCCCAA
GCGGCAACTCGAGGCCGAGAGCATGGCCATTATTCTCAAAAAGGAGCTGG
ACATTCCGGTCATCGAGATCGAGGATCCGAACGCTCAGCTCGATGGTGGC
GATGTGCTTTTCACGGGTCGCGAATTCTTCGTTGGCATCTCCAGTTTCAC
CAATGAGGAGGGAGCCCGGGCGGTGGCCATGGCCTATCCCGAATATCCAG
TGACGCCGATTCGGGTCAACGGCACCAAGAGGCTGAAGTACTATGTGACC
ATGGCGGGGCCGGAAGTGCTGTGTGTGAGCAGTAGCCCCACCTGCCAGGA
GATCGTCAAGCGGATGGAGCGCGAGGCCATCTGCACCTACCAGAAGTTGA
CTCTGCCCGAGGAGAGTGCGGCCAATATGCTGTACATCAATGGAACGATC
GTGCACAGATCCCCAACGGAAATTCCAGAAGCCTACAAGACTTTAAAAGA
GGAAATCGACATTCCAACACGCAACATAAATATAAGTGAATTTAGCCAAT
ATTCCAGTGGTCTGACCTCGTCGTGTTTGTTGCTGCGACGCTGGA
MXO02217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-PA | 807 | CG1764-RA | 1..787 | 9..795 | 3885 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1764-RA | 1395 | CG1764-RA | 104..891 | 8..795 | 3910 | 99.7 | Plus |
CG1764-RB | 1780 | CG1764-RB | 475..1262 | 8..795 | 3910 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13295687..13296013 | 368..42 | 1635 | 100 | Minus |
X | 23542271 | X | 13295158..13295383 | 689..464 | 1130 | 100 | Minus |
X | 23542271 | X | 13294991..13295098 | 795..688 | 510 | 98.1 | Minus |
X | 23542271 | X | 13295525..13295625 | 466..366 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:06 has no hits.
MXO02217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:25 Download gff for
MXO02217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-PA | 1..786 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:52 Download gff for
MXO02217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 467..1261 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:08 Download gff for
MXO02217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1764-RB | 467..1261 | 1..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:08 Download gff for
MXO02217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13294992..13295096 | 690..794 | 98 | <- | Minus |
X | 13295158..13295382 | 465..689 | 100 | <- | Minus |
X | 13295527..13295624 | 367..464 | 100 | <- | Minus |
X | 13295689..13296011 | 44..366 | 100 | <- | Minus |
X | 13296513..13296555 | 1..43 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:52 Download gff for
MXO02217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13189560..13189657 | 367..464 | 100 | <- | Minus |
arm_X | 13189722..13190044 | 44..366 | 100 | <- | Minus |
arm_X | 13190546..13190588 | 1..43 | 93 | | Minus |
arm_X | 13189025..13189129 | 690..794 | 98 | <- | Minus |
arm_X | 13189191..13189415 | 465..689 | 100 | <- | Minus |