Clone MXO02217 Report

Search the DGRC for MXO02217

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:17
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG1764-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02217.3prime Sequence

770 bp (696 high quality bases) assembled on 2007-01-19

> MXO02217.3prime
ATGGTCTAGAAAGCTTGCCAAGCTCCGTATGGACTTCCAGCGTCGCAGCA
ACAAACACGACGAGGTCAGACCACTGGAATATTGGCTAAATTCACTTATA
TTTATGTTGCGTGTTGGAATGTCGATTTTCTCTTTTAAAGTCTTGTAGGC
TTCTGGAATTTCCGTTGGGGATCTGTGCACGATCGTTCCATTGATGTACA
GCATATTGGCCGCACTCTCCTCGGGCAGAGTCAACTTCTGGTAGGTGCAG
ATGGCCTCGCGCTCCATCCGCTTGACGATCTCCTGGCAGGTGGGGCTACT
GCTCACACACAGCACTTCCGGCCCCGCCATGGTCACATAGTACTTCAGCC
TCTTGGTGCCGTTGACCCGAATCGGCGTCACTGGATATTCGGGATAGGCC
ATGGCCACCGCCCGGGCTCCCTCCTCATTGGTGAAACTGGAGATGCCAAC
GAAGAATTCGCGACCCGTGAAAAGCACATCGCCACCATCGAGCTGAGCGT
TCGGATCCTCGATCTCGATGACCGGAATGTCCAGCTCCTTTTTGAGAATA
ATGGCCATGCTCTCGGCCTCGAGTTGCCGCTTGGGATGCTCCGATCTTCC
GATCAGGGCCACTCCGTTACAGATCACCGCACTGTTCTCGACAAATACGC
CCTCGGGCAGCTGGTCATCCGGCGGCAGCTCGATCACATCGAGACCAATG
GTCCTCAGGAGGGTGCAGTACTGCTCGTGCTGCTGCTTGGCCAGCTGTAC
GTCGAACTTTCCGTTCTCCA

MXO02217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-PA 807 CG1764-RA 53..804 770..19 3735 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-RA 1395 CG1764-RA 157..908 770..19 3745 99.9 Minus
CG1764-RB 1780 CG1764-RB 528..1279 770..19 3745 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13295687..13295994 463..770 1540 100 Plus
X 23542271 X 13295158..13295383 142..367 1130 100 Plus
X 23542271 X 13294974..13295098 19..143 610 99.2 Plus
X 23542271 X 13295525..13295625 365..465 505 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:45:20 has no hits.

MXO02217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:24 Download gff for MXO02217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-PA 54..807 16..769 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:06 Download gff for MXO02217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 529..1290 8..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:58 Download gff for MXO02217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 529..1290 8..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:58 Download gff for MXO02217.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13294963..13295096 8..141 96 <- Plus
X 13295158..13295382 142..366 100 <- Plus
X 13295527..13295624 367..464 100 <- Plus
X 13295689..13295993 465..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:06 Download gff for MXO02217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13189560..13189657 367..464 100 <- Plus
arm_X 13188996..13189129 8..141 96 <- Plus
arm_X 13189191..13189415 142..366 100 <- Plus
arm_X 13189722..13190026 465..769 100   Plus

MXO02217.5prime Sequence

795 bp (698 high quality bases) assembled on 2007-01-19

> MXO02217.5prime
CAGTCGACATGTCGCCCAAGTACACACATGCGATTGTGGCCAGAATCTCG
GATGCCCTGCTGGAGAACGGAAAGTTCGACGTACAGCTGGCCAAGCAGCA
GCACGAGCAGTACTGCACCCTCCTGAGGACCATTGGTCTCGATGTGATCG
AGCTGCCGCCGGATGACCAGCTGCCCGAGGGCGTATTTGTCGAGAACAGT
GCGGTGATCTGTAACGGAGTGGCCCTGATCGGAAGATCGGAGCATCCCAA
GCGGCAACTCGAGGCCGAGAGCATGGCCATTATTCTCAAAAAGGAGCTGG
ACATTCCGGTCATCGAGATCGAGGATCCGAACGCTCAGCTCGATGGTGGC
GATGTGCTTTTCACGGGTCGCGAATTCTTCGTTGGCATCTCCAGTTTCAC
CAATGAGGAGGGAGCCCGGGCGGTGGCCATGGCCTATCCCGAATATCCAG
TGACGCCGATTCGGGTCAACGGCACCAAGAGGCTGAAGTACTATGTGACC
ATGGCGGGGCCGGAAGTGCTGTGTGTGAGCAGTAGCCCCACCTGCCAGGA
GATCGTCAAGCGGATGGAGCGCGAGGCCATCTGCACCTACCAGAAGTTGA
CTCTGCCCGAGGAGAGTGCGGCCAATATGCTGTACATCAATGGAACGATC
GTGCACAGATCCCCAACGGAAATTCCAGAAGCCTACAAGACTTTAAAAGA
GGAAATCGACATTCCAACACGCAACATAAATATAAGTGAATTTAGCCAAT
ATTCCAGTGGTCTGACCTCGTCGTGTTTGTTGCTGCGACGCTGGA

MXO02217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-PA 807 CG1764-RA 1..787 9..795 3885 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-RA 1395 CG1764-RA 104..891 8..795 3910 99.7 Plus
CG1764-RB 1780 CG1764-RB 475..1262 8..795 3910 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13295687..13296013 368..42 1635 100 Minus
X 23542271 X 13295158..13295383 689..464 1130 100 Minus
X 23542271 X 13294991..13295098 795..688 510 98.1 Minus
X 23542271 X 13295525..13295625 466..366 505 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:21:06 has no hits.

MXO02217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:25 Download gff for MXO02217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-PA 1..786 9..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:52 Download gff for MXO02217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 467..1261 1..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:08 Download gff for MXO02217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 467..1261 1..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:08 Download gff for MXO02217.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13294992..13295096 690..794 98 <- Minus
X 13295158..13295382 465..689 100 <- Minus
X 13295527..13295624 367..464 100 <- Minus
X 13295689..13296011 44..366 100 <- Minus
X 13296513..13296555 1..43 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:52 Download gff for MXO02217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13189560..13189657 367..464 100 <- Minus
arm_X 13189722..13190044 44..366 100 <- Minus
arm_X 13190546..13190588 1..43 93   Minus
arm_X 13189025..13189129 690..794 98 <- Minus
arm_X 13189191..13189415 465..689 100 <- Minus