MXO02218.3prime Sequence
495 bp (495 high quality bases) assembled on 2007-01-19
> MXO02218.3prime
ATGGTCTAGAAAGCTTGCCGTATACTCACCGAGTCCGCGGGCAGCCACAT
CGGTGGCCACCAGTATCGAGTGCCGGCCATTGCGGAAGCTCGAGAGCACA
AAGTCGCGCTCCTGCTGCGACTTATCGCCGTGGATGGCGCATGCGCGCCA
GCCCTGGCGGGAGATATTGCGCGTGATCTCGTCCACACGCTTCTTGGTTT
CCACGAAAATGATGGTCTTGGTCTCGTTCTCCGCCGAGATGTCTGTTAGC
AGCTTGATCAGCTTCATCAATTTCTCATTCTCATCGCACACGTCCACGAT
CTGGAGGATGTTGTGATTGGCGCTCAGCGAAAGCGAACCAATGTTCACCT
GTATGTAGTTATTAAGGAATTCCTCGGCCAGCTGGCGCACCTCTTTGGGC
CAGGTAGCTGACCACATGAGTACCTGACGGTCCGGTCGGATCTGCTGCAT
GATCTTTCTGATCTGGGGCTCGAAGCCCATGTCGAGCATGTCGAC
MXO02218.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-PB | 474 | CG10077-RB | 1..471 | 489..19 | 2355 | 100 | Minus |
| CG10077-PA | 2457 | CG10077-RA | 946..1405 | 489..30 | 2300 | 100 | Minus |
| CG10279-PD | 1728 | Rm62-RD | 892..924 | 483..451 | 165 | 100 | Minus |
| CG10279-PC | 1737 | Rm62-RC | 901..933 | 483..451 | 165 | 100 | Minus |
| CG10279-PB | 1737 | Rm62-RB | 901..933 | 483..451 | 165 | 100 | Minus |
| CG10279-PE | 1737 | Rm62-RE | 901..933 | 483..451 | 165 | 100 | Minus |
| CG10279-PF | 1737 | Rm62-RF | 901..933 | 483..451 | 165 | 100 | Minus |
| CG10279-PA | 2160 | Rm62-RA | 1324..1356 | 483..451 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RC | 3634 | CG10077-RC | 1206..1676 | 489..19 | 2355 | 100 | Minus |
| CG10077-RD | 3420 | CG10077-RD | 1070..1529 | 489..30 | 2300 | 100 | Minus |
| CG10077-RA | 3543 | CG10077-RA | 1193..1652 | 489..30 | 2300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6953762..6954232 | 19..489 | 2355 | 100 | Plus |
| 3R | 32079331 | 3R | 6004034..6004244 | 280..490 | 395 | 79.1 | Plus |
| X | 23542271 | X | 7929009..7929112 | 387..490 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:46 has no hits.
MXO02218.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:25 Download gff for
MXO02218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-PB | 1..474 | 18..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:00 Download gff for
MXO02218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1200..1683 | 10..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:35 Download gff for
MXO02218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1200..1683 | 10..495 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:35 Download gff for
MXO02218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6953754..6954236 | 10..495 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:00 Download gff for
MXO02218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6946854..6947336 | 10..495 | 98 | | Plus |
