Clone MXO02219 Report

Search the DGRC for MXO02219

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:19
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG3709-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02219.3prime Sequence

669 bp (666 high quality bases) assembled on 2007-01-19

> MXO02219.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGTGTTTCGAGTTATCTACTTCATGTG
GCCAATCTAAATCGATTCCCACCACATCTAGAGCTTGAATATCCATGGGT
TTGCCTATAATAGAGGACAATGATGGCGTGGTCCTACCAAATTCGCCATG
AACTAACTCTTTTATGTAAGTCCCCGCTTGAGTGACAATATCGATGATCA
AGGCTTTTGGATTTCCACGATGCACCTTGGCGGTGACACTGTAAATTGTT
CTGGGACGCGTGTGCAATGGACGACGATGAAGAACTCGTATGGGGGTCTT
TTGTTGTATGTTAAAGCTTGCTGATATTTGCAGTTGTTCCAGAATCTTTA
CTGATACTGGTTCTTGCAGGGCACAAAGAGCGCGATAGAATTTCTTTTTC
TGCTCTTCTCCCGTCTTTATGTGGGTTAATTCTTCTCTGGGCACGACTTG
GAGGTGATGTATAGACACCATACCAGACGCATCCACAGCCCGTTCCATCG
CAAAGGCTTCATCTTTAGTTAGGCAACTCCTTTTGGCATTTGGAATTTCT
AGAACAAAAGGCCTTCCTTTCCCCAGGCATCGGACGTCCACATCTTCTCT
GCCACTCGACATGAAGGTGATTTGCCCAGCTTCTCTGTAAGTGGGGACCG
ACATGCCTATTATAATTCC

MXO02219.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3709-PA 1503 CG3709-RA 849..1500 667..19 3140 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3709-RA 1699 CG3709-RA 907..1558 667..19 3185 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 153680..154322 19..659 3115 99.7 Plus
Blast to na_te.dros performed on 2014-11-28 20:15:49 has no hits.

MXO02219.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:26 Download gff for MXO02219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3709-PA 846..1503 18..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:02 Download gff for MXO02219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 904..1562 13..669 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:37 Download gff for MXO02219.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 904..1562 13..669 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:37 Download gff for MXO02219.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 153676..154333 13..669 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:02 Download gff for MXO02219.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 153676..154333 13..669 98   Plus

MXO02219.5prime Sequence

665 bp (663 high quality bases) assembled on 2007-01-19

> MXO02219.5prime
CAGTCGACATGAAAAACCAGGATTTGGTGGAATATTTAAGGTCGTGCGGG
GTGTGCGAAATTTGCCAGCTGCGTTACCTGAAGGCCAGAGGCGCGGAGTA
TAGAAACATCAATGAGACTTTGCAAAAGTTGGATGTAAAACTAAATGAAA
ATGTGGAAAACGAAGAGCTTGTTATATCCGAAGGGAGTCAACCATCTAAA
AGGGCCCGTCTGGGCGTGTGTTCAACGTGCCTGGGTTTATTCTCCAAAGA
CTTTCAGAATGAGCTGCTCAGCAGCATTTTGGCATCGGATTTCGCGAAAT
ACGATTGCCAGAAAATCGTTCTGGCGATTTGTCTACCGATGTCGCTTCAG
TTGAGACAGCTGGCCATGTGGTTTGCCTTGCGAAGAAGATTTGGACCATC
TATAGACGAAAACAATCCCCCAGACGTGCCTATAAAAGAGGCTGTCAAGC
TGATCCTACACCCTATAATCTGTGAAAAGCTGGCCAAGGTTTACGATGCC
AACGGTCTGATGATCAATATAGACCTCACGCACAGTCTGGAAGGCGAAGA
GGTGGAAAAACTGGTCAAATTAAACAAAGAAGCCTTTCCCGCCAAGGCCT
CGCATCAAAAGCGCATTGAAATTTCGCGAGGTTTACTAGAGAAACAGTAT
CAACCCTCCAAAGTT

MXO02219.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3709-PA 1503 CG3709-RA 1..657 9..665 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3709-RA 1699 CG3709-RA 59..715 9..665 3285 100 Plus
CG11455-RJ 869 CG11455-RJ 40..159 128..9 600 100 Minus
CG11455-RK 798 CG11455-RK 40..90 128..78 255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 154523..155061 665..127 2695 100 Minus
2L 23513712 2L 155128..155247 128..9 600 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:33:51 has no hits.

MXO02219.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:26 Download gff for MXO02219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3709-PA 1..657 9..665 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:47 Download gff for MXO02219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 52..715 2..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:10 Download gff for MXO02219.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3709-RA 52..715 2..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:10 Download gff for MXO02219.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 155128..155251 2..128 96   Minus
2L 154523..155059 129..665 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:47 Download gff for MXO02219.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 154523..155059 129..665 100 <- Minus
arm_2L 155128..155251 2..128 96   Minus