MXO02219.3prime Sequence
669 bp (666 high quality bases) assembled on 2007-01-19
> MXO02219.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGTGTTTCGAGTTATCTACTTCATGTG
GCCAATCTAAATCGATTCCCACCACATCTAGAGCTTGAATATCCATGGGT
TTGCCTATAATAGAGGACAATGATGGCGTGGTCCTACCAAATTCGCCATG
AACTAACTCTTTTATGTAAGTCCCCGCTTGAGTGACAATATCGATGATCA
AGGCTTTTGGATTTCCACGATGCACCTTGGCGGTGACACTGTAAATTGTT
CTGGGACGCGTGTGCAATGGACGACGATGAAGAACTCGTATGGGGGTCTT
TTGTTGTATGTTAAAGCTTGCTGATATTTGCAGTTGTTCCAGAATCTTTA
CTGATACTGGTTCTTGCAGGGCACAAAGAGCGCGATAGAATTTCTTTTTC
TGCTCTTCTCCCGTCTTTATGTGGGTTAATTCTTCTCTGGGCACGACTTG
GAGGTGATGTATAGACACCATACCAGACGCATCCACAGCCCGTTCCATCG
CAAAGGCTTCATCTTTAGTTAGGCAACTCCTTTTGGCATTTGGAATTTCT
AGAACAAAAGGCCTTCCTTTCCCCAGGCATCGGACGTCCACATCTTCTCT
GCCACTCGACATGAAGGTGATTTGCCCAGCTTCTCTGTAAGTGGGGACCG
ACATGCCTATTATAATTCC
MXO02219.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3709-PA | 1503 | CG3709-RA | 849..1500 | 667..19 | 3140 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3709-RA | 1699 | CG3709-RA | 907..1558 | 667..19 | 3185 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 153680..154322 | 19..659 | 3115 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:49 has no hits.
MXO02219.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:26 Download gff for
MXO02219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3709-PA | 846..1503 | 18..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:02 Download gff for
MXO02219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3709-RA | 904..1562 | 13..669 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:37 Download gff for
MXO02219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3709-RA | 904..1562 | 13..669 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:37 Download gff for
MXO02219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 153676..154333 | 13..669 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:02 Download gff for
MXO02219.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 153676..154333 | 13..669 | 98 | | Plus |
MXO02219.5prime Sequence
665 bp (663 high quality bases) assembled on 2007-01-19
> MXO02219.5prime
CAGTCGACATGAAAAACCAGGATTTGGTGGAATATTTAAGGTCGTGCGGG
GTGTGCGAAATTTGCCAGCTGCGTTACCTGAAGGCCAGAGGCGCGGAGTA
TAGAAACATCAATGAGACTTTGCAAAAGTTGGATGTAAAACTAAATGAAA
ATGTGGAAAACGAAGAGCTTGTTATATCCGAAGGGAGTCAACCATCTAAA
AGGGCCCGTCTGGGCGTGTGTTCAACGTGCCTGGGTTTATTCTCCAAAGA
CTTTCAGAATGAGCTGCTCAGCAGCATTTTGGCATCGGATTTCGCGAAAT
ACGATTGCCAGAAAATCGTTCTGGCGATTTGTCTACCGATGTCGCTTCAG
TTGAGACAGCTGGCCATGTGGTTTGCCTTGCGAAGAAGATTTGGACCATC
TATAGACGAAAACAATCCCCCAGACGTGCCTATAAAAGAGGCTGTCAAGC
TGATCCTACACCCTATAATCTGTGAAAAGCTGGCCAAGGTTTACGATGCC
AACGGTCTGATGATCAATATAGACCTCACGCACAGTCTGGAAGGCGAAGA
GGTGGAAAAACTGGTCAAATTAAACAAAGAAGCCTTTCCCGCCAAGGCCT
CGCATCAAAAGCGCATTGAAATTTCGCGAGGTTTACTAGAGAAACAGTAT
CAACCCTCCAAAGTT
MXO02219.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3709-PA | 1503 | CG3709-RA | 1..657 | 9..665 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3709-RA | 1699 | CG3709-RA | 59..715 | 9..665 | 3285 | 100 | Plus |
CG11455-RJ | 869 | CG11455-RJ | 40..159 | 128..9 | 600 | 100 | Minus |
CG11455-RK | 798 | CG11455-RK | 40..90 | 128..78 | 255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 154523..155061 | 665..127 | 2695 | 100 | Minus |
2L | 23513712 | 2L | 155128..155247 | 128..9 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:51 has no hits.
MXO02219.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:26 Download gff for
MXO02219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3709-PA | 1..657 | 9..665 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:47 Download gff for
MXO02219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3709-RA | 52..715 | 2..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:10 Download gff for
MXO02219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3709-RA | 52..715 | 2..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:10 Download gff for
MXO02219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 155128..155251 | 2..128 | 96 | | Minus |
2L | 154523..155059 | 129..665 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:47 Download gff for
MXO02219.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 154523..155059 | 129..665 | 100 | <- | Minus |
arm_2L | 155128..155251 | 2..128 | 96 | | Minus |