Clone MXO02220 Report

Search the DGRC for MXO02220

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:20
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptslow-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02220.3prime Sequence

844 bp (747 high quality bases) assembled on 2007-01-19

> MXO02220.3prime
ATGGTCTAGAAAGCTTGCGGGGCAATTGGCATTGGGGCCATTCCGGCACT
TCAGCAGCAGGTTCAGCATACCCTCCAGCTTGTTCGTCCGGGACTCTGTC
TTGTAGAGATTCGTCTGCAGTCGACTGACATCCTGAGCCTGCTTTTCCAG
CGTGCTTAGCCGACTCTTGAGTGTGTCCACCACACTGTAGGTGGCCTGCA
GCGACTTTTGCAGCTCGTTCGTGTGCACTCGCTCATTGGCCAAGGACTTT
TCGATCTTCTGGAGTCGCGTGGCCACCTCCGCGTCCGTATCATCGATATC
GTTCTCCAGATCCCGAGCCTCGAACGCATCGTCCGCATTCGTGGACACCT
TCTTGCAGCTCTGCTGATCCGACTGGAGAACGAATCCCTGACGGCAGCGG
CAGAAGTAAGATCCATGCGTATTGATGCACTGTTGATCGCATGGCTTCTC
CGTCTGGCACTCGTCCACATCCTGCTCGCAGAAACGTCCTGTGAAACCAG
TTGGACAGCTGCAGGTGCTAGGAGCCGTACAATTGCCACCGTTTTGGCAG
CGCGCGGAGCAAATAGGTTTCATGCACGAATCCGACCTTGGGTTTTCCCG
GCTCCATCCCGTGCAGCAGTCGTAGGTCATCTGCTGGGCGGTCTTGTGAT
CGATGACGTCCCTGTAGGCCTGCTCGTGGACCACCTGCACCCTGGTGCAC
TTCTGGCCACTAAAGGTGGGCGGCTGGCAGGGCGTGGCCACGTGCTTCCA
GGTGGGACGACTGTAGACCTCCGTTCGCTTCACGGGCATCGTAACCGTTC
GCTGTTGCATGCAAATGTGCCGCCTTTCCATTTCCTTGGGATCT

MXO02220.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7447-PA 1539 CG7447-RA 711..1536 844..19 4130 100 Minus
CG7447-PB 1539 CG7447-RB 711..1536 844..19 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 2104 CG7447-RB 938..1763 844..19 4130 100 Minus
slow-RA 2364 CG7447-RA 1198..2023 844..19 4130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4402225..4402644 566..147 2100 100 Minus
3L 28110227 3L 4401898..4402156 825..567 1295 100 Minus
3L 28110227 3L 4402711..4402840 148..19 650 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:52:59 has no hits.

MXO02220.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:26 Download gff for MXO02220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 711..1539 15..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:23 Download gff for MXO02220.3prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 1198..2026 15..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:46 Download gff for MXO02220.3prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 1198..2026 15..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:46 Download gff for MXO02220.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4391201..4391221 824..844 100 -> Minus
3L 4401900..4402156 567..823 100 -> Minus
3L 4402225..4402643 148..566 100 -> Minus
3L 4402712..4402843 15..147 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:23 Download gff for MXO02220.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4391201..4391221 824..844 100 -> Minus
arm_3L 4401900..4402156 567..823 100 -> Minus
arm_3L 4402225..4402643 148..566 100 -> Minus
arm_3L 4402712..4402843 15..147 98   Minus

MXO02220.5prime Sequence

780 bp (530 high quality bases) assembled on 2007-01-19

> MXO02220.5prime
CAATCGACATGCCAGAAATGATTTACTCGAGCTCTTTCCTGCTGCTCTGT
TGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCCAATAGCAC
CAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGGTCACAGTC
ATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAAGGCAGCAG
CGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAGCTGCTGCC
CGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCAGCCACATA
ATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGCGAAACCCC
ACCGAATGGGATTACAATACTTACAACATCATGACCAACACGTTCGGTCC
ACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGGCGAGGATA
ATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAAGGGGTTAC
TCATTCGTGCCATCGGTAACGGTCACCACTGCACCGCCACCGAATCTGAA
TCGAAGATCCGCGAGTCCTGATTCTCGCAGTAGCATCGACACTATTCCAC
CACTGGTTCCGGCCAGAAGGGGCTATAGCTACACCACCAACACAAGTTCT
CCTCCAGTGAACACCATCACCAATGACAATCCCTTCAAGACTAACACTAT
TGGTCGAGGCTATCCCACAGATCCCAAGGAAATGCAAAGGCGGCACATTT
GCTTGCAACAGCGAAGGTTACATGCCGTGA

MXO02220.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7447-PA 1539 CG7447-RA 1..757 9..765 3535 98.6 Plus
CG7447-PB 1539 CG7447-RB 1..757 9..765 3535 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 2104 CG7447-RB 228..997 9..776 3650 98.4 Plus
slow-RA 2364 CG7447-RA 488..1257 9..776 3650 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4390491..4391222 9..740 3525 98.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:30:35 has no hits.

MXO02220.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:27 Download gff for MXO02220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 1..774 9..779 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:03 Download gff for MXO02220.5prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 481..1261 1..779 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:53 Download gff for MXO02220.5prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 481..1261 1..779 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:53 Download gff for MXO02220.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4390484..4391221 1..739 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:03 Download gff for MXO02220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4390484..4391221 1..739 98 -> Plus