MXO02220.3prime Sequence
844 bp (747 high quality bases) assembled on 2007-01-19
> MXO02220.3prime
ATGGTCTAGAAAGCTTGCGGGGCAATTGGCATTGGGGCCATTCCGGCACT
TCAGCAGCAGGTTCAGCATACCCTCCAGCTTGTTCGTCCGGGACTCTGTC
TTGTAGAGATTCGTCTGCAGTCGACTGACATCCTGAGCCTGCTTTTCCAG
CGTGCTTAGCCGACTCTTGAGTGTGTCCACCACACTGTAGGTGGCCTGCA
GCGACTTTTGCAGCTCGTTCGTGTGCACTCGCTCATTGGCCAAGGACTTT
TCGATCTTCTGGAGTCGCGTGGCCACCTCCGCGTCCGTATCATCGATATC
GTTCTCCAGATCCCGAGCCTCGAACGCATCGTCCGCATTCGTGGACACCT
TCTTGCAGCTCTGCTGATCCGACTGGAGAACGAATCCCTGACGGCAGCGG
CAGAAGTAAGATCCATGCGTATTGATGCACTGTTGATCGCATGGCTTCTC
CGTCTGGCACTCGTCCACATCCTGCTCGCAGAAACGTCCTGTGAAACCAG
TTGGACAGCTGCAGGTGCTAGGAGCCGTACAATTGCCACCGTTTTGGCAG
CGCGCGGAGCAAATAGGTTTCATGCACGAATCCGACCTTGGGTTTTCCCG
GCTCCATCCCGTGCAGCAGTCGTAGGTCATCTGCTGGGCGGTCTTGTGAT
CGATGACGTCCCTGTAGGCCTGCTCGTGGACCACCTGCACCCTGGTGCAC
TTCTGGCCACTAAAGGTGGGCGGCTGGCAGGGCGTGGCCACGTGCTTCCA
GGTGGGACGACTGTAGACCTCCGTTCGCTTCACGGGCATCGTAACCGTTC
GCTGTTGCATGCAAATGTGCCGCCTTTCCATTTCCTTGGGATCT
MXO02220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7447-PA | 1539 | CG7447-RA | 711..1536 | 844..19 | 4130 | 100 | Minus |
CG7447-PB | 1539 | CG7447-RB | 711..1536 | 844..19 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 2104 | CG7447-RB | 938..1763 | 844..19 | 4130 | 100 | Minus |
slow-RA | 2364 | CG7447-RA | 1198..2023 | 844..19 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4402225..4402644 | 566..147 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 4401898..4402156 | 825..567 | 1295 | 100 | Minus |
3L | 28110227 | 3L | 4402711..4402840 | 148..19 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:59 has no hits.
MXO02220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:26 Download gff for
MXO02220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 711..1539 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:23 Download gff for
MXO02220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 1198..2026 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:46 Download gff for
MXO02220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 1198..2026 | 15..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:46 Download gff for
MXO02220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4391201..4391221 | 824..844 | 100 | -> | Minus |
3L | 4401900..4402156 | 567..823 | 100 | -> | Minus |
3L | 4402225..4402643 | 148..566 | 100 | -> | Minus |
3L | 4402712..4402843 | 15..147 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:23 Download gff for
MXO02220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4391201..4391221 | 824..844 | 100 | -> | Minus |
arm_3L | 4401900..4402156 | 567..823 | 100 | -> | Minus |
arm_3L | 4402225..4402643 | 148..566 | 100 | -> | Minus |
arm_3L | 4402712..4402843 | 15..147 | 98 | | Minus |
MXO02220.5prime Sequence
780 bp (530 high quality bases) assembled on 2007-01-19
> MXO02220.5prime
CAATCGACATGCCAGAAATGATTTACTCGAGCTCTTTCCTGCTGCTCTGT
TGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCCAATAGCAC
CAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGGTCACAGTC
ATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAAGGCAGCAG
CGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAGCTGCTGCC
CGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCAGCCACATA
ATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGCGAAACCCC
ACCGAATGGGATTACAATACTTACAACATCATGACCAACACGTTCGGTCC
ACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGGCGAGGATA
ATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAAGGGGTTAC
TCATTCGTGCCATCGGTAACGGTCACCACTGCACCGCCACCGAATCTGAA
TCGAAGATCCGCGAGTCCTGATTCTCGCAGTAGCATCGACACTATTCCAC
CACTGGTTCCGGCCAGAAGGGGCTATAGCTACACCACCAACACAAGTTCT
CCTCCAGTGAACACCATCACCAATGACAATCCCTTCAAGACTAACACTAT
TGGTCGAGGCTATCCCACAGATCCCAAGGAAATGCAAAGGCGGCACATTT
GCTTGCAACAGCGAAGGTTACATGCCGTGA
MXO02220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7447-PA | 1539 | CG7447-RA | 1..757 | 9..765 | 3535 | 98.6 | Plus |
CG7447-PB | 1539 | CG7447-RB | 1..757 | 9..765 | 3535 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 2104 | CG7447-RB | 228..997 | 9..776 | 3650 | 98.4 | Plus |
slow-RA | 2364 | CG7447-RA | 488..1257 | 9..776 | 3650 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4390491..4391222 | 9..740 | 3525 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:35 has no hits.
MXO02220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:27 Download gff for
MXO02220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 1..774 | 9..779 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:03 Download gff for
MXO02220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 481..1261 | 1..779 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:53 Download gff for
MXO02220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 481..1261 | 1..779 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:53 Download gff for
MXO02220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4390484..4391221 | 1..739 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:03 Download gff for
MXO02220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4390484..4391221 | 1..739 | 98 | -> | Plus |