Clone MXO02221 Report

Search the DGRC for MXO02221

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:21
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptRhoGDI-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02221.3prime Sequence

466 bp (464 high quality bases) assembled on 2007-01-19

> MXO02221.3prime
ATGGTCTAGAAAGCTTGCGGCCCAGTCCTTTTTGATCTCAAAGGTCCAGT
CCCACTCCAGGTGTATGTGCTTGTCGTCATCCGTGAAGACCGAACTGACC
GAGTAGGTGCCGCGGGAGAATGTGCCTGAAGGTGCCTCCTCGGCGGGCGT
CAAATAGAACTGAATCTCCTTCTTCGGCGGATAGGAGCCAACCATATGCT
TCATCTTGTCAACATTAACACCCAAGCGAGAAGTCTTTTGAACATACTTA
AGGCCATGGACTATTTCACGCTGCACAATAAAATCAATGCGCACCTTGTA
CTGAACACCTTCTTTGATCACAAAAAGCTGCTTTTTCAGCTGACTAAGGT
CACCGGTAAGATCCAATTCCATGTCGTCGCGTCCTTCGACAACGAGGGCC
AGTTTCTTTACAATAACTTTTCGGGGATCATTGGGTTCAACAATAATTTT
CTCGGTCTGGGCGGCA

MXO02221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7823-PA 606 RhoGDI-RA 156..603 466..19 2240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 1442 CG7823-RB 240..687 466..19 2240 100 Minus
RhoGDI-RA 1540 CG7823-RA 338..785 466..19 2240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19931981..19932175 213..19 975 100 Minus
3L 28110227 3L 19931260..19931381 330..209 595 99.2 Minus
3L 28110227 3L 19931087..19931197 438..328 555 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:45:53 has no hits.

MXO02221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:28 Download gff for MXO02221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 157..606 15..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:13 Download gff for MXO02221.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 339..790 11..465 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:55 Download gff for MXO02221.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 339..790 11..465 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:55 Download gff for MXO02221.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19931982..19932180 11..212 98   Minus
3L 19930987..19931014 438..465 100 -> Minus
3L 19931088..19931197 328..437 100 -> Minus
3L 19931263..19931377 213..327 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:13 Download gff for MXO02221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19925082..19925280 11..212 98   Minus
arm_3L 19924087..19924114 438..465 100 -> Minus
arm_3L 19924188..19924297 328..437 100 -> Minus
arm_3L 19924363..19924477 213..327 100 -> Minus

MXO02221.5prime Sequence

627 bp (627 high quality bases) assembled on 2007-01-19

> MXO02221.5prime
CAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGCACCACGAC
GACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAGACCATCGA
GGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCGCTACAAGG
AGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTGAACCCAAT
GATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTCGAAGGACG
CGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCTGAAAAAGC
AGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCATTGATTTT
ATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAAAAGACTTC
TCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGGCTCCTATC
CGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGGAGGCACCT
TCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTCTTCACGGA
TGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGAGATCAAAA
AGGACTGGGCCGCAAGCTTTCTAGACC

MXO02221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7823-PA 606 RhoGDI-RA 1..603 9..611 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 1442 CG7823-RB 84..687 8..611 3020 100 Plus
RhoGDI-RA 1540 CG7823-RA 182..785 8..611 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19931981..19932175 417..611 975 100 Plus
3L 28110227 3L 19930830..19931014 8..192 925 100 Plus
3L 28110227 3L 19931260..19931381 300..421 595 99.2 Plus
3L 28110227 3L 19931087..19931197 192..302 555 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:30:45 has no hits.

MXO02221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:29 Download gff for MXO02221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 1..606 9..615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:11 Download gff for MXO02221.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 175..790 1..619 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:58 Download gff for MXO02221.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 175..790 1..619 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:58 Download gff for MXO02221.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19930823..19931014 1..192 97 -> Plus
3L 19931088..19931197 193..302 100 -> Plus
3L 19931263..19931377 303..417 100 -> Plus
3L 19931982..19932180 418..619 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:11 Download gff for MXO02221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19923923..19924114 1..192 97 -> Plus
arm_3L 19924188..19924297 193..302 100 -> Plus
arm_3L 19924363..19924477 303..417 100 -> Plus
arm_3L 19925082..19925280 418..619 98   Plus