MXO02221.3prime Sequence
466 bp (464 high quality bases) assembled on 2007-01-19
> MXO02221.3prime
ATGGTCTAGAAAGCTTGCGGCCCAGTCCTTTTTGATCTCAAAGGTCCAGT
CCCACTCCAGGTGTATGTGCTTGTCGTCATCCGTGAAGACCGAACTGACC
GAGTAGGTGCCGCGGGAGAATGTGCCTGAAGGTGCCTCCTCGGCGGGCGT
CAAATAGAACTGAATCTCCTTCTTCGGCGGATAGGAGCCAACCATATGCT
TCATCTTGTCAACATTAACACCCAAGCGAGAAGTCTTTTGAACATACTTA
AGGCCATGGACTATTTCACGCTGCACAATAAAATCAATGCGCACCTTGTA
CTGAACACCTTCTTTGATCACAAAAAGCTGCTTTTTCAGCTGACTAAGGT
CACCGGTAAGATCCAATTCCATGTCGTCGCGTCCTTCGACAACGAGGGCC
AGTTTCTTTACAATAACTTTTCGGGGATCATTGGGTTCAACAATAATTTT
CTCGGTCTGGGCGGCA
MXO02221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7823-PA | 606 | RhoGDI-RA | 156..603 | 466..19 | 2240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 1442 | CG7823-RB | 240..687 | 466..19 | 2240 | 100 | Minus |
RhoGDI-RA | 1540 | CG7823-RA | 338..785 | 466..19 | 2240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19931981..19932175 | 213..19 | 975 | 100 | Minus |
3L | 28110227 | 3L | 19931260..19931381 | 330..209 | 595 | 99.2 | Minus |
3L | 28110227 | 3L | 19931087..19931197 | 438..328 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:53 has no hits.
MXO02221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:28 Download gff for
MXO02221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 157..606 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:13 Download gff for
MXO02221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 339..790 | 11..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:55 Download gff for
MXO02221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 339..790 | 11..465 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:55 Download gff for
MXO02221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19931982..19932180 | 11..212 | 98 | | Minus |
3L | 19930987..19931014 | 438..465 | 100 | -> | Minus |
3L | 19931088..19931197 | 328..437 | 100 | -> | Minus |
3L | 19931263..19931377 | 213..327 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:13 Download gff for
MXO02221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19925082..19925280 | 11..212 | 98 | | Minus |
arm_3L | 19924087..19924114 | 438..465 | 100 | -> | Minus |
arm_3L | 19924188..19924297 | 328..437 | 100 | -> | Minus |
arm_3L | 19924363..19924477 | 213..327 | 100 | -> | Minus |
MXO02221.5prime Sequence
627 bp (627 high quality bases) assembled on 2007-01-19
> MXO02221.5prime
CAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGCACCACGAC
GACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAGACCATCGA
GGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCGCTACAAGG
AGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTGAACCCAAT
GATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTCGAAGGACG
CGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCTGAAAAAGC
AGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCATTGATTTT
ATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAAAAGACTTC
TCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGGCTCCTATC
CGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGGAGGCACCT
TCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTCTTCACGGA
TGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGAGATCAAAA
AGGACTGGGCCGCAAGCTTTCTAGACC
MXO02221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7823-PA | 606 | RhoGDI-RA | 1..603 | 9..611 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 1442 | CG7823-RB | 84..687 | 8..611 | 3020 | 100 | Plus |
RhoGDI-RA | 1540 | CG7823-RA | 182..785 | 8..611 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19931981..19932175 | 417..611 | 975 | 100 | Plus |
3L | 28110227 | 3L | 19930830..19931014 | 8..192 | 925 | 100 | Plus |
3L | 28110227 | 3L | 19931260..19931381 | 300..421 | 595 | 99.2 | Plus |
3L | 28110227 | 3L | 19931087..19931197 | 192..302 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:45 has no hits.
MXO02221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:29 Download gff for
MXO02221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 1..606 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:11 Download gff for
MXO02221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 175..790 | 1..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:58 Download gff for
MXO02221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 175..790 | 1..619 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:58 Download gff for
MXO02221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19930823..19931014 | 1..192 | 97 | -> | Plus |
3L | 19931088..19931197 | 193..302 | 100 | -> | Plus |
3L | 19931263..19931377 | 303..417 | 100 | -> | Plus |
3L | 19931982..19932180 | 418..619 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:11 Download gff for
MXO02221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19923923..19924114 | 1..192 | 97 | -> | Plus |
arm_3L | 19924188..19924297 | 193..302 | 100 | -> | Plus |
arm_3L | 19924363..19924477 | 303..417 | 100 | -> | Plus |
arm_3L | 19925082..19925280 | 418..619 | 98 | | Plus |