MXO02223.3prime Sequence
668 bp (666 high quality bases) assembled on 2007-01-19
> MXO02223.3prime
ATGGTCTAGAAAGCTTGCATAATTCTTTCGTCCCGTTTGCTGCAGGTCCA
GTTTGTTCAGCAGATCGTCAAACTCGCTGAAGAGATGGGTTGTGCCATAG
CTGTCCACATAGGTCTTGCTGCCCCTGGAGGTTTTCTTGAAAGCGGGCAG
CACCGGACTGTGACCATGCAGAAGATTCACATTCTGATAAGACTGCGCCT
TGGCCGAACCGGCCAATGGATGCGACTGACTCTTGCCAACCGTGGGCGCC
AGTTCCAGAAAATTGGGCGCCTTCTTTGGCTGCAACTTGACCTGGTTGAG
CAGCGGATTGTGCAACTGAAGCTGCCGGTAGATGGGCAGGGCGTGCTTCG
GTGGCACCACCACGTGCTGGCGGCCCACCGCCTGCGGGTACAGGTACGTG
GTCTCCACCGTTGGCACCTGGCGGTAGTGGTATCGTCCCTCCCGCGGCGT
ATACCTCCCATCCGAGCTCAGGGCGATGTGGAAGACGGTGCGCATGGGCT
TGCTGTAGTACTGATACACCTGCGGATTCCGCTGCTCGGGAACTATCCCA
TCTGGCACTGCGATGCCCTCCTTCTGCAGGCGATTCAAAAACAATCGATC
CGTCTCAAAGGCGGTGTCGGGTATCTTACCACCCGCATGTGGCAATACTT
GTTCCCGATAGATTTGGC
MXO02223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-PA | 759 | CG32037-RA | 107..756 | 668..19 | 3250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 1836 | CG32037-RB | 523..1172 | 668..19 | 3250 | 100 | Minus |
CG32037-RA | 1540 | CG32037-RA | 523..1172 | 668..19 | 3250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9490566..9490818 | 270..522 | 1265 | 100 | Plus |
3L | 28110227 | 3L | 9490323..9490508 | 85..270 | 930 | 100 | Plus |
3L | 28110227 | 3L | 9491472..9491622 | 518..668 | 755 | 100 | Plus |
3L | 28110227 | 3L | 9490166..9490231 | 19..84 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:54 has no hits.
MXO02223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:30 Download gff for
MXO02223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 107..759 | 18..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:17 Download gff for
MXO02223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 523..1178 | 10..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:02 Download gff for
MXO02223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 523..1178 | 10..668 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:02 Download gff for
MXO02223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9490159..9490231 | 10..84 | 94 | <- | Plus |
3L | 9490323..9490507 | 85..269 | 100 | <- | Plus |
3L | 9490566..9490815 | 270..519 | 100 | <- | Plus |
3L | 9491474..9491622 | 520..668 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:17 Download gff for
MXO02223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9483259..9483331 | 10..84 | 94 | <- | Plus |
arm_3L | 9483423..9483607 | 85..269 | 100 | <- | Plus |
arm_3L | 9483666..9483915 | 270..519 | 100 | <- | Plus |
arm_3L | 9484574..9484722 | 520..668 | 100 | | Plus |
MXO02223.5prime Sequence
780 bp (780 high quality bases) assembled on 2007-01-19
> MXO02223.5prime
CAGTCGACATGTCTACGCCATATGTGATCTTGCTGATCGGTTTACTATAT
CTTTGCGTGGGCCCATTCATAATTGCCCAAGGCTCGGAGTTTGCTGAGCG
CAACCACAAGAAACGCCAAATCTATCGGGAACAAGTATTGCCACATGCGG
GTGGTAAGATACCCGACACCGCCTTTGAGACGGATCGATTGTTTTTGAAT
CGCCTGCAGAAGGAGGGCATCGCAGTGCCAGATGGGATAGTTCCCGAGCA
GCGGAATCCGCAGGTGTATCAGTACTACAGCAAGCCCATGCGCACCGTCT
TCCACATCGCCCTGAGCTCGGATGGGAGGTATACGCCGCGGGAGGGACGA
TACCACTACCGCCAGGTGCCAACGGTGGAGACCACGTACCTGTACCCGCA
GGCGGTGGGCCGCCAGCACGTGGTGGTGCCACCGAAGCACGCCCTGCCCA
TCTACCGGCAGCTTCAGTTGCACAATCCGCTGCTCAACCAGGTCAAGTTG
CAGCCAAAGAAGGCGCCCAATTTTCTGGAACTGGCGCCCACGGTTGGCAA
GAGTCAGTCGCATCCATTGGCCGGTTCGGCCAAGGCGCAGTCTTATCAGA
ATGTGAATCTTCTGCATGGTCACAGTCCGGTGCTGCCCGCTTTCAAGAAA
ACCTCCAGGGGCAGCAAGACCTATGTGGACAGCTATGGCACAACCCATCT
CTTCAGCGAGTTTGACGATCTGCTGAACAAACTGGACCTGCAGCAAACGG
GACGAAAGAATTATGCAAGCTTTCTAGACC
MXO02223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-PA | 759 | CG32037-RA | 1..756 | 9..764 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 1836 | CG32037-RB | 417..1172 | 9..764 | 3780 | 100 | Plus |
CG32037-RA | 1540 | CG32037-RA | 417..1172 | 9..764 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9490566..9490818 | 513..261 | 1265 | 100 | Minus |
3L | 28110227 | 3L | 9490323..9490508 | 698..513 | 930 | 100 | Minus |
3L | 28110227 | 3L | 9491472..9491630 | 265..107 | 795 | 100 | Minus |
3L | 28110227 | 3L | 9491698..9491799 | 110..9 | 510 | 100 | Minus |
3L | 28110227 | 3L | 9490166..9490231 | 764..699 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:00 has no hits.
MXO02223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:30 Download gff for
MXO02223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 1..759 | 9..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:21 Download gff for
MXO02223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:58 Download gff for
MXO02223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:58 Download gff for
MXO02223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9490159..9490231 | 699..773 | 94 | <- | Minus |
3L | 9490323..9490507 | 514..698 | 100 | <- | Minus |
3L | 9490566..9490815 | 264..513 | 100 | <- | Minus |
3L | 9491474..9491626 | 111..263 | 100 | <- | Minus |
3L | 9491698..9491808 | 1..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:21 Download gff for
MXO02223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9483259..9483331 | 699..773 | 94 | <- | Minus |
arm_3L | 9483423..9483607 | 514..698 | 100 | <- | Minus |
arm_3L | 9483666..9483915 | 264..513 | 100 | <- | Minus |
arm_3L | 9484574..9484726 | 111..263 | 100 | <- | Minus |
arm_3L | 9484798..9484908 | 1..110 | 97 | | Minus |