Clone MXO02223 Report

Search the DGRC for MXO02223

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:23
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG32037-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02223.3prime Sequence

668 bp (666 high quality bases) assembled on 2007-01-19

> MXO02223.3prime
ATGGTCTAGAAAGCTTGCATAATTCTTTCGTCCCGTTTGCTGCAGGTCCA
GTTTGTTCAGCAGATCGTCAAACTCGCTGAAGAGATGGGTTGTGCCATAG
CTGTCCACATAGGTCTTGCTGCCCCTGGAGGTTTTCTTGAAAGCGGGCAG
CACCGGACTGTGACCATGCAGAAGATTCACATTCTGATAAGACTGCGCCT
TGGCCGAACCGGCCAATGGATGCGACTGACTCTTGCCAACCGTGGGCGCC
AGTTCCAGAAAATTGGGCGCCTTCTTTGGCTGCAACTTGACCTGGTTGAG
CAGCGGATTGTGCAACTGAAGCTGCCGGTAGATGGGCAGGGCGTGCTTCG
GTGGCACCACCACGTGCTGGCGGCCCACCGCCTGCGGGTACAGGTACGTG
GTCTCCACCGTTGGCACCTGGCGGTAGTGGTATCGTCCCTCCCGCGGCGT
ATACCTCCCATCCGAGCTCAGGGCGATGTGGAAGACGGTGCGCATGGGCT
TGCTGTAGTACTGATACACCTGCGGATTCCGCTGCTCGGGAACTATCCCA
TCTGGCACTGCGATGCCCTCCTTCTGCAGGCGATTCAAAAACAATCGATC
CGTCTCAAAGGCGGTGTCGGGTATCTTACCACCCGCATGTGGCAATACTT
GTTCCCGATAGATTTGGC

MXO02223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-PA 759 CG32037-RA 107..756 668..19 3250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-RB 1836 CG32037-RB 523..1172 668..19 3250 100 Minus
CG32037-RA 1540 CG32037-RA 523..1172 668..19 3250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9490566..9490818 270..522 1265 100 Plus
3L 28110227 3L 9490323..9490508 85..270 930 100 Plus
3L 28110227 3L 9491472..9491622 518..668 755 100 Plus
3L 28110227 3L 9490166..9490231 19..84 330 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:30:54 has no hits.

MXO02223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:30 Download gff for MXO02223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-PA 107..759 18..668 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:17 Download gff for MXO02223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 523..1178 10..668 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:02 Download gff for MXO02223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 523..1178 10..668 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:02 Download gff for MXO02223.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9490159..9490231 10..84 94 <- Plus
3L 9490323..9490507 85..269 100 <- Plus
3L 9490566..9490815 270..519 100 <- Plus
3L 9491474..9491622 520..668 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:17 Download gff for MXO02223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9483259..9483331 10..84 94 <- Plus
arm_3L 9483423..9483607 85..269 100 <- Plus
arm_3L 9483666..9483915 270..519 100 <- Plus
arm_3L 9484574..9484722 520..668 100   Plus

MXO02223.5prime Sequence

780 bp (780 high quality bases) assembled on 2007-01-19

> MXO02223.5prime
CAGTCGACATGTCTACGCCATATGTGATCTTGCTGATCGGTTTACTATAT
CTTTGCGTGGGCCCATTCATAATTGCCCAAGGCTCGGAGTTTGCTGAGCG
CAACCACAAGAAACGCCAAATCTATCGGGAACAAGTATTGCCACATGCGG
GTGGTAAGATACCCGACACCGCCTTTGAGACGGATCGATTGTTTTTGAAT
CGCCTGCAGAAGGAGGGCATCGCAGTGCCAGATGGGATAGTTCCCGAGCA
GCGGAATCCGCAGGTGTATCAGTACTACAGCAAGCCCATGCGCACCGTCT
TCCACATCGCCCTGAGCTCGGATGGGAGGTATACGCCGCGGGAGGGACGA
TACCACTACCGCCAGGTGCCAACGGTGGAGACCACGTACCTGTACCCGCA
GGCGGTGGGCCGCCAGCACGTGGTGGTGCCACCGAAGCACGCCCTGCCCA
TCTACCGGCAGCTTCAGTTGCACAATCCGCTGCTCAACCAGGTCAAGTTG
CAGCCAAAGAAGGCGCCCAATTTTCTGGAACTGGCGCCCACGGTTGGCAA
GAGTCAGTCGCATCCATTGGCCGGTTCGGCCAAGGCGCAGTCTTATCAGA
ATGTGAATCTTCTGCATGGTCACAGTCCGGTGCTGCCCGCTTTCAAGAAA
ACCTCCAGGGGCAGCAAGACCTATGTGGACAGCTATGGCACAACCCATCT
CTTCAGCGAGTTTGACGATCTGCTGAACAAACTGGACCTGCAGCAAACGG
GACGAAAGAATTATGCAAGCTTTCTAGACC

MXO02223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-PA 759 CG32037-RA 1..756 9..764 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32037-RB 1836 CG32037-RB 417..1172 9..764 3780 100 Plus
CG32037-RA 1540 CG32037-RA 417..1172 9..764 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9490566..9490818 513..261 1265 100 Minus
3L 28110227 3L 9490323..9490508 698..513 930 100 Minus
3L 28110227 3L 9491472..9491630 265..107 795 100 Minus
3L 28110227 3L 9491698..9491799 110..9 510 100 Minus
3L 28110227 3L 9490166..9490231 764..699 330 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:24:00 has no hits.

MXO02223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:30 Download gff for MXO02223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-PA 1..759 9..765 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:21 Download gff for MXO02223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 408..1178 1..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:58 Download gff for MXO02223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32037-RA 408..1178 1..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:58 Download gff for MXO02223.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9490159..9490231 699..773 94 <- Minus
3L 9490323..9490507 514..698 100 <- Minus
3L 9490566..9490815 264..513 100 <- Minus
3L 9491474..9491626 111..263 100 <- Minus
3L 9491698..9491808 1..110 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:21 Download gff for MXO02223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9483259..9483331 699..773 94 <- Minus
arm_3L 9483423..9483607 514..698 100 <- Minus
arm_3L 9483666..9483915 264..513 100 <- Minus
arm_3L 9484574..9484726 111..263 100 <- Minus
arm_3L 9484798..9484908 1..110 97   Minus