MXO02229.3prime Sequence
719 bp (651 high quality bases) assembled on 2007-01-19
> MXO02229.3prime
ATGGTCTAGAAAGCTTGCGACCGCCACTATCTTGCTGGGATCCACTTTCA
CGCGCAGAAACACGGTATCGCCCTTGATGAAGGGTCGGCTGTGCAGCAGT
TCGTGGGAGATGAAGCGTGGGAAGCCGAATCCTAGCTGATCTGGTTCGTT
GGACGGCCTCTGGAAGTTCTCCCAGGTGGGATCGGGGACGAAGGATTCCG
CCACGCCTCCCTGGCCACTTTGGGCGCCCTGTTCGAACAGTGTGAAGGTG
ATGGAGTGCGAGAATGGCCACTTGAGCAGAGCATCGTACTCTCCCGGCAG
GACCTTTATGTAGACGGAGACGTGCGTGTTTTCCCCAGGTCCATTGCCAT
TGAGGAACATCGACGCCTGCAGCTTGTATCCTTACTGGCCCCCCGTAGAA
CGGGGGTGAGACTAGCTCCAAGAAATCCTTGCCCCTCGCTTCGGCCATCT
TAGCCGACCAGTCGGTGATCTTCCACAACAGAGTGCCTGTGTAGTTGATG
GACAGCTTGGACACCGCCGACTTGAGCATCTGGATCTGCTGACCCTGGCG
CGAGCTGAGGGCCACCATCAGCGAGAGATGAGCGGCGGCGTTGCTCTCCA
GATGGGCCTCCAGCATCTGGCGTGGACCCTTGAAGCGGCATCCCGCCTCC
TTGAAGCTGCCAGACACGGCTAGCGACTGGCATTCATCACGCAAATGCGC
CTCTAGCTCACCCCGGGGA
MXO02229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3048-PA | 1461 | Traf1-RA | 1089..1454 | 388..23 | 1805 | 99.7 | Minus |
| CG3048-PB | 1239 | Traf1-RB | 867..1232 | 388..23 | 1805 | 99.7 | Minus |
| CG3048-PA | 1461 | Traf1-RA | 759..1053 | 719..425 | 1425 | 99.3 | Minus |
| CG3048-PB | 1239 | Traf1-RB | 537..831 | 719..425 | 1425 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-RE | 2675 | CG3048-RE | 1356..2055 | 719..19 | 3300 | 98.1 | Minus |
| Traf4-RA | 2361 | CG3048-RA | 1042..1741 | 719..19 | 3300 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4379397..4380096 | 719..19 | 3275 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:32:52 has no hits.
MXO02229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:33 Download gff for
MXO02229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3048-PB | 538..1239 | 15..718 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:41 Download gff for
MXO02229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 1043..1745 | 14..718 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:59 Download gff for
MXO02229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 1043..1745 | 14..718 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:59 Download gff for
MXO02229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4379398..4380100 | 14..718 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:41 Download gff for
MXO02229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4379398..4380100 | 14..718 | 97 | | Minus |
MXO02229.5prime Sequence
797 bp (796 high quality bases) assembled on 2007-01-19
> MXO02229.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGGAGATC
MXO02229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:31:48 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 19:24:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 19:24:07 has no hits.
Blast to na_te.dros performed on 2014-11-28 19:24:08 has no hits.
MXO02229.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 19:57:03 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 19:57:03 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:39:23 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:39:23 has no hits.
