Clone MXO02230 Report

Search the DGRC for MXO02230

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:30
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptNTPase-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02230.3prime Sequence

851 bp (743 high quality bases) assembled on 2007-01-19

> MXO02230.3prime
ATGGTCTAGAAAGCTTGCGGAATTACTGAATTTCTCGTCGCTAGTCAGAA
CGTTGTATGCACAGCCGAGGGCCCAGGAGATTTCGTGGCCATCTATCTTC
TTGTAAAGCTTAATCTTCTTGCCATCGTTGAGGCCAAATCCTTCGCGCAG
CAGCGTCGAGATGAAGGTAAGGTCGAAGCACATGAAGGGCTGCTCATCGT
TGGGAATGGCACAGATCTCCTGGGCCTTCTTGCGATAAGCTTCCACCGTG
GTCTCGCCGCCAGCCAGTGGATCCACCAGACCCGACTCGATGGCCCGCTC
AAAGTAGTAGCTGAACGCGGCCACCGCGTGCTGCTTGAGTGTGAACGGCT
TGGGCTTGACCAGCGGCATTACCTTGCTCTTGACCAGCTCCAGGCAGGCA
TCGAAGTCCACAATGGGCTGCTCGGCACTGGACTTGCCATTCTCCTTGCC
GCTGACCTTGTACTGCACATTGCCGTATGTCCACGTGCGATTGGCGATTA
TGGGATTCACGCAGACGCTCTCCAGCACCGTATCCTCCTTCTTGTAGCCG
TGCGTGAAGACAGCATGGCGTGCAGCCATTAGACCCAGTCCCAGATAGCT
GTGCGTGAAGACGTTGATCTTCTTGCTGGACGTGACCACCTCGTGCATGT
ACTTATCGTACACGGGCACCTGGTCCGGATCCGTTGGCGAGAAGGTTACC
TGCGTGCTACCGCCGCCCAAGTCCAAGGCAGCTGCCTGGTTCGTCTTGGA
CAGGCGGGCCAGCAGGAAGTTCACGGTAAACCAGCTGAAGATGCCCTCGT
CCGTGCCGTCCATGATCTCCCCGGCATCCATATCCACACTAAACTCGGGA
C

MXO02230.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3059-PB 1395 NTPase-RB 563..1392 848..19 4100 99.7 Minus
CG3059-PA 1386 NTPase-RA 554..1383 848..19 4100 99.7 Minus
CG3059-PD 816 NTPase-RD 1..813 831..19 4015 99.7 Minus
CG3059-PC 816 NTPase-RC 1..813 831..19 4015 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
NTPase-RF 2291 CG3059-RF 935..1764 848..19 4120 99.8 Minus
NTPase-RE 2111 CG3059-RE 755..1584 848..19 4120 99.8 Minus
NTPase-RA 2095 CG3059-RA 740..1569 848..19 4120 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2881382..2882121 109..848 3670 99.7 Plus
2L 23513712 2L 2881231..2881322 19..110 460 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:19:54 has no hits.

MXO02230.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:34 Download gff for MXO02230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3059-PA 552..1386 15..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:52 Download gff for MXO02230.3prime
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 738..1579 8..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:24 Download gff for MXO02230.3prime
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 738..1579 8..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:24 Download gff for MXO02230.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2881221..2881320 8..108 95 <- Plus
2L 2881382..2882123 109..851 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:52 Download gff for MXO02230.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2881221..2881320 8..108 95 <- Plus
arm_2L 2881382..2882123 109..851 99   Plus

MXO02230.5prime Sequence

698 bp (663 high quality bases) assembled on 2007-01-19

> MXO02230.5prime
CAGTCGACATGAAATACGAATATAAGCTGCTGGCCACGGATGAGAAGCCA
CCGCGGCGGAAAAGTAGCGGATCACCAAATGCCAGCAGTGGTGGAAACCG
CGGGCCCAGCGGCCTCAAGATCTCCTTCCTGTGCCTGATCATCTCCGTCA
TCCTCCTGCTCTTTGTCTTTGGCTTCGTCTCCGAGAACGCCAGTCCGTAT
CTGGCCCGTTTGGCCTCCAAGTTTGGCTACAGCAAGGTGCAGTATGCGGC
CATCATCGATGCCGGATCGACGGGCAGCCGTGTGCTGGCCTACAAGTTCA
ATCGCAGCTTCATCGACAACAAACTGGTGCTGTACGAGGAGCTGTTCAAG
GAGCGCAAGCCGGGTCTGAGCTCCTTCGCGGATAATCCCGCCGAGGGTGC
CCACTCCATCAAACTGCTGCTGGACGAGGCCCGCGCCTTCATACCCAAGG
AGCACTGGTCTTCCACACCGCTGGTTCTGAAAGCGACCGCCGGCCTGAGA
CTCCTGCCCGCCAGCAAGGCGGAAAACATTCTAAATGCCGTCCGAGATCT
CTTCGCCAAGTCCGAGTTTAGTGTGGATATGGATGCCGTGGAGATCATGG
ACGGCACGGACGAGGGCATCTTCAGCTGGTTTACCGTGAACTTCCTGCTG
GGCCGCCTGTCCAAGACGAACCACGCAGCTGCCTTGGACTTGGGCGGA

MXO02230.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3059-PA 1386 NTPase-RA 1..689 9..697 3420 99.8 Plus
CG3059-PB 1395 NTPase-RB 31..698 30..697 3315 99.8 Plus
CG3059-PD 816 NTPase-RD 1..119 579..697 570 99.1 Plus
CG3059-PC 816 NTPase-RC 1..119 579..697 570 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
NTPase-RA 2095 CG3059-RA 186..875 8..697 3435 99.9 Plus
NTPase-RC 2182 CG3059-RC 293..961 29..697 3330 99.9 Plus
NTPase-RD 2107 CG3059-RD 218..886 29..697 3330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2881986..2882512 697..171 2620 99.8 Minus
2L 23513712 2L 2882691..2882834 172..29 720 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:33:03 has no hits.

MXO02230.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:34 Download gff for MXO02230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3059-PA 1..689 9..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:49 Download gff for MXO02230.5prime
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 186..875 8..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:04 Download gff for MXO02230.5prime
Subject Subject Range Query Range Percent Splice Strand
NTPase-RA 186..875 8..697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:04 Download gff for MXO02230.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2882920..2882941 8..29 100   Minus
2L 2881986..2882511 172..697 99 <- Minus
2L 2882692..2882833 30..171 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:49 Download gff for MXO02230.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2881986..2882511 172..697 99 <- Minus
arm_2L 2882692..2882833 30..171 100 <- Minus
arm_2L 2882920..2882941 8..29 100   Minus