Clone MXO02231 Report

Search the DGRC for MXO02231

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:22
Well:31
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG3077-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02231.3prime Sequence

764 bp (740 high quality bases) assembled on 2007-01-19

> MXO02231.3prime
ATGGTCTAGAAAGCTTGCAATTGTTTCAGTGCGAGGATCGATCTTGTGTA
TAGCCTGCATGAGGCTCTCGGTGTTCGCCGTGTTGATGCCCTGCTTGGAC
ATGTCAGTCAGTCGGTCGGTGATTGGCTTTTGGTCCTGGCCGCGCTGCCA
CCACAGATGGGCGCAGGTGTGAAGCAGGGGAATGTAGAGCGGCAGCAGAT
CAATATCGCACAACGTCTCGAAGCGACTCAGTGCCAGCAGGGCCCACCTC
TCGGCCGCGTGATGAGGCACTGGGGATGAGGTGCAGGCAGCCACTAGACG
GCAGAGTATCAAAAGCACCGGCCTCGATCGATTCATGTATATCTTGTTCA
GCAAGCGGAAACAGTTCTCCAGAATAGGTATGGCCATTTCGTTACGCCGC
TCATCCAGAAACTGGCACGCCCTGGTCAGTTCGTCGTGCTGCAGGAAGCG
CAGGAAGTACTCCGAGTCCCGGAGCATCGCCTGGCTTGCCACATACGTGA
GGAATGCCTCGAAGGCTGCACTCCGTTCGCCGATCAGCTCGGACTTGAAG
TTACCCATCAGGACCTTGGCTGGGAAGTACTTGTTGGCCATCTCCGCCGG
ATGCTGCCGCTTAAGGCCCAGATAAAGCTCCCGAAAGTCGGTGTATCGGC
GCTCAATCTTTGCCGGCTGAGTGTCCTCCGTGGCTCCATCCTGCTTAACA
GTGAGCTCATAGACCACGAACCGCTTGATCTTCACATCCTCGCCTCGGGC
GGCATATGTGGCAG

MXO02231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 981 CG3077-RA 241..978 755..19 3650 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RB 2025 CG3077-RB 388..1132 761..19 3675 99.7 Minus
CG3077-RA 1372 CG3077-RA 397..1141 761..19 3675 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764502..2765109 149..755 2990 99.8 Plus
2L 23513712 2L 2764309..2764442 19..152 670 100 Plus
Blast to na_te.dros performed 2014-11-28 20:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1181..1239 735..678 112 67.8 Minus

MXO02231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:35 Download gff for MXO02231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 229..981 16..764 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:42 Download gff for MXO02231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 392..1145 15..764 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:44 Download gff for MXO02231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 392..1145 15..764 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:44 Download gff for MXO02231.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2764305..2764441 15..151 98 <- Plus
2L 2764505..2765117 152..764 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:42 Download gff for MXO02231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2764305..2764441 15..151 98 <- Plus
arm_2L 2764505..2765117 152..764 99   Plus

MXO02231.5prime Sequence

851 bp (810 high quality bases) assembled on 2007-01-19

> MXO02231.5prime
CAGTCGACATGCCCATTCACGCCGTGATGGCCAAGCGCCTGCACCACCAG
CCTACCTTCGATGGGGATCCACCCGGTCCGGATGAGCTGGACAGTCCAGC
CATCGAGGCGGCGGCCCTCGACATTCCCCCTCCCGAATCCGATAAGGCGC
TCCAAAAAGGTGTCTGGGAGCGAGCCACAAGTGCTGAGTATAAGCCGACC
ACGGATGGGAGCACCGTGCTCCGCTTTGACATCTTGCTGGCCCACATAAT
GCCGCCCGATGGCGAGGATGTGAAGATCAAGCGGTTCGTGGTCTATGAGC
TCACTGTTAAGCAGGATGGAGCCACGGAGGACACTCAGCCGGCAAAGATT
GAGCGCCGATACACCGACTTTCGGGAGCTTTATCTGGGCCTTAAGCGGCA
GCATCCGGCGGAGATGGCCAACAAGTACTTCCCAGCCAAGGTCCTGATGG
GTAACTTCAAGTCCGAGCTGATCGGCGAACGGAGTGCAGCCTTCGAGGCA
TTCCTCACGTATGTGGCAAGCCAGGCGATGCTCCGGGACTCGGAGTACTT
CCTGCGCTTCCTGCAGCACGACGAACTGACCAGGGCGTGCCAGTTTCTGG
ATGAGCGGCGTAACGAAATGGCCATACCTATTCTGGAGAACTGTTTCCGC
TTGCTGAACAAGATATACATGAATCGATCGAGGCCGGTGCTTTTGATACT
CTGCCGTCTAGTGGCTGCCTGCACCTCATCCCCAGTGCCTCATCACGCGG
CCGAGAGGTGGGCCCTGCTGGCACTGAGTCGCTTCGAGACGTTGTGCGAT
ATTGATCTGCTGCCGCTCTACATTCCCCTGCTTCACACCTGCGCCCATCT
G

MXO02231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-PA 981 CG3077-RA 1..843 9..851 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3077-RA 1372 CG3077-RA 164..1006 9..851 4215 100 Plus
CG3077-RB 2025 CG3077-RB 162..997 16..851 4180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2764507..2765200 851..158 3470 100 Minus
2L 23513712 2L 2765282..2765427 161..16 730 100 Minus
Blast to na_te.dros performed 2014-11-28 20:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1158..1239 245..327 115 63.1 Plus

MXO02231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:35 Download gff for MXO02231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-PA 1..843 9..851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:37 Download gff for MXO02231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 161..1006 5..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:49 Download gff for MXO02231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3077-RA 161..1006 5..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:49 Download gff for MXO02231.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2764507..2765198 160..851 100 <- Minus
2L 2765284..2765432 12..159 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:37 Download gff for MXO02231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2764507..2765198 160..851 100 <- Minus
arm_2L 2765284..2765432 12..159 99   Minus