MXO02237.3prime Sequence
422 bp (388 high quality bases) assembled on 2007-01-19
> MXO02237.3prime
ATGGTCTAGAAAGCTTGCCATAATGATCTGCGGTTCTGGGACACTGGCCG
CAATGCTTTTATGGGGCAAGACCTGGCCTCCATTAATGTAGAGCTCATCC
TTCACGATTACATCCTCGCCTAGCACGGTGATGCCTTCGATGCGAACCCA
ACGGCCAACTGTAGAACGCCAACCGACAATGCAGGAGTCCAGCCATGAGT
GTGAGCGAACGATGGCGCCTTTGAGGATGGTCGAGCGCTTAATGCACACG
CCATCCTCGATGACCACGTCCGGTCCAATGGTTACATTAGGCCCTATGCG
ACAACCCTCGCCGATTTTGGCCGTGGGATCCACCAACACGTTGCCCACCA
CTCCAGGGCCTGTGTACAGCTTGGGGGATTGCTTCTGGCGCAGCGAGCTT
AGATACAGACACATGCCGGTTA
MXO02237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1129-PB | 1110 | CG1129-RB | 704..1107 | 422..19 | 2020 | 100 | Minus |
| CG1129-PA | 1110 | CG1129-RA | 704..1107 | 422..19 | 2020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1129-RE | 2499 | CG1129-RE | 1968..2371 | 422..19 | 2020 | 100 | Minus |
| CG1129-RD | 1612 | CG1129-RD | 868..1271 | 422..19 | 2020 | 100 | Minus |
| CG1129-RA | 1715 | CG1129-RA | 971..1374 | 422..19 | 2020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4815286..4815684 | 417..19 | 1995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:05 has no hits.
MXO02237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:38 Download gff for
MXO02237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-PA | 705..1110 | 16..421 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:55 Download gff for
MXO02237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RB | 1111..1519 | 13..421 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:21 Download gff for
MXO02237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RA | 972..1380 | 13..421 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:21 Download gff for
MXO02237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4815282..4815690 | 13..421 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:55 Download gff for
MXO02237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 641004..641412 | 13..421 | 98 | | Minus |
MXO02237.5prime Sequence
699 bp (697 high quality bases) assembled on 2007-01-19
> MXO02237.5prime
CAGTCGACATGTGTGGAAATCCAGCTGTGGGAAACGGGACGAGGGCGTTG
ATTCTGGTCGGTGGTTATGGGACCCGGCTGCGACCCCTGACCCTCAGCAC
GCCCAAGCCACTGGTGGAGTTTGCCAATAAGCCGATTCTTCTCCACCAAC
TGGAGGCACTCGTCGATGCGGGATGTCGTCAGGTTATTTTAGCCGTCAGC
TATCGAGCCGAGCAAATGGAAAAGGAGCTTAAAGTCGAAGCCAAGAAACT
GGGCGTGGAATTGATCTTCTCACACGAGACGGAACCCCTGGGAACAGCTG
GACCTCTGGCCCTAGCAAAAACGATTTTAGCAGCCAGCTCAGAGCCATTT
TTCGTGCTCAATTCGGACGTTATATGCGATTTTCCATTTAAACAACTAGT
GCAATTCCATTGTAATCACGGAAAAGAAGGCACAATTGTTGTCACAAAGG
TCGAAGAACCATCCAAATACGGAGTTGTGCTGTACGATGAGAACGGCTGT
ATAAAAAACTTTATTGAAAAGCCACAAGAGTTCGTTAGCAATAAGATCAA
TGCCGGCATTTACATCTTTAATCCCTCCGTGCTTGACCGGATCGAAGTTA
AGCCCACATCAATAGAGAAGGAGGTGTTCCCTGAAATGACGCAGCAACAG
GAGTTGTATGCAATGGATTTAACTGGATTCTGGATGGACATCGGACAGC
MXO02237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1129-PB | 1110 | CG1129-RB | 1..691 | 9..699 | 3455 | 100 | Plus |
| CG1129-PA | 1110 | CG1129-RA | 1..691 | 9..699 | 3455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1129-RE | 2499 | CG1129-RE | 1265..1955 | 9..699 | 3455 | 100 | Plus |
| CG1129-RD | 1612 | CG1129-RD | 165..855 | 9..699 | 3455 | 100 | Plus |
| CG1129-RA | 1715 | CG1129-RA | 268..958 | 9..699 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4814236..4814755 | 180..699 | 2600 | 100 | Plus |
| 3R | 32079331 | 3R | 4813803..4813978 | 9..184 | 880 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G2 | 3102 | G2 G2 3102bp | 170..235 | 580..645 | 114 | 63.6 | Plus |
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2982..3035 | 271..324 | 108 | 66.7 | Plus |
MXO02237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:18:38 Download gff for
MXO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-PA | 1..691 | 9..699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:35 Download gff for
MXO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RB | 402..1097 | 1..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:04 Download gff for
MXO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RA | 263..958 | 1..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:04 Download gff for
MXO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4813798..4813976 | 1..182 | 97 | -> | Plus |
| 3R | 4814239..4814755 | 183..699 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:35 Download gff for
MXO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 639520..639698 | 1..182 | 97 | -> | Plus |
| arm_3R | 639961..640477 | 183..699 | 100 | | Plus |
